Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04426 ATGGCGTTTTCATCTGAAGATGGTAATGTTGATAAAAATACTAATGGTAAAACAGGAGCCAAATTCATTGTAGCAGACAAATCACCGGAGTTTTCGTGCAAAGAACTAGCCAATGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTCGGAGAGGTCTACTATGGAGAGTTGAGAGGCAAGAAAACTGCCATAAAAAAGATGAAGATCCAAGCAACAAGAGAATTTCTTGCTGAACTTAAAGTCTTAACAAGTGTTCATCATTGGAACCTGGTACACTTGATAGGATATTGTGTTGAGGGATCTCTATTCCTTGTGTATGAATACATAGACAATGGAAACTTAAGCCAACATCTACATAATTCAGCGAAAGAGCCGATGACATGGTCTACAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGACTCGAGTATATTCATGATCATTCAGTGCCTGTATATATCCACCGCGACATTAAATCAGATAACATTTTACTAAATCAAAACTTCACTGCAAAGATTGCTGATTTTGGATTAACCAAGCGGACGGATGTTGCAAGTTCGACAGATAAAACTGATCATGTGGCAGGCACATTTGGTTACATGCCACCTGAAAATGTATACGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAACAGCTGTGATCAAGATCGATACAACCGAGTTTGATTTCAAGACCAATGAATCTTTTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCAAGAGGGAGATCCTATAGAAGAAGGTCTAAGAAAAATGGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATCAACAAGATGACACAGCTTGCCAAGGCTTGCATAAACCGAGACCCGAAACAACGTCCAACAATGAGATCTGTTGTGGTTTCTCTTATGACATTAAATTCAACAATTAGTGATGGTACAGACAGTACATCATTGAGTCTTACTATGGAGCATGACTCAAATTAA 1050 0.3819 MAFSSEDGNVDKNTNGKTGAKFIVADKSPEFSCKELANATDNFSLANKIGQGGFGEVYYGELRGKKTAIKKMKIQATREFLAELKVLTSVHHWNLVHLIGYCVEGSLFLVYEYIDNGNLSQHLHNSAKEPMTWSTRVQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNQNFTAKIADFGLTKRTDVASSTDKTDHVAGTFGYMPPENVYGRISRKIDVYAFGVVLYELISAKTAVIKIDTTEFDFKTNESFDEYKSLVALFDEVIDQEGDPIEEGLRKMVDPRLGDNYSIDSINKMTQLAKACINRDPKQRPTMRSVVVSLMTLNSTISDGTDSTSLSLTMEHDSN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04426 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Trre10g04426 349 PIRSF ILK 8 339 - -
Trre10g04426 349 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 333 IPR044812 GO:0019199|GO:0045087
Trre10g04426 349 Pfam Protein tyrosine and serine/threonine kinase 45 245 IPR001245 GO:0004672|GO:0006468
Trre10g04426 349 SMART serkin_6 43 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04426 349 FunFam PTI1-like tyrosine-protein kinase 3 114 338 - -
Trre10g04426 349 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Trre10g04426 349 Gene3D Phosphorylase Kinase; domain 1 14 113 - -
Trre10g04426 349 Gene3D Transferase(Phosphotransferase) domain 1 114 343 - -
Trre10g04426 349 FunFam LysM receptor kinase 2 22 113 - -
Trre10g04426 349 ProSiteProfiles Protein kinase domain profile. 43 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04426 349 SUPERFAMILY Protein kinase-like (PK-like) 22 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04426 Trre-Chr10 53492229 53494200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04426 19 330 Receptor kinase-like Gene Family AT3G21630 62.821 1.05e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04426 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04426 - K13429 tpra:123920651 610.142