Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04425 ATGAAACCAATCAAATTCAGATTATTACTTCTATTCTTGTTACTGGCCTTTAAGTTCTTTACTGCAGAATCATTCTGTAGCAAAACTTGTGACATAGCTTTAGCTTCCTATTATATACAGGAAGAAAGCTTGTCATATATTTCAGACATCAGAAACACATTGGAAGTTTCACATGTGAATATTCCTTTCCCTTGTGATTGCATCAATGGTGAGTTTCTTGGTCACACTTTTCTATACGAGCTTCAGGTCGCAGATGTCATTCATTCAATGGCTGAGTTAACTTTGATCAGTTTGACCACTGAGGATTCGGTTGATGAGTGGATGGAGAGAAACAACATTAATGCTACTGTTAACTGTTCCTCTGGGGTTTCTAAGGGTTATGGTTTGTTCATCACATATACACTTAGGAGCAAGTATACTTTGGAGTCTATTCCTAAATTTATGAAGGTTAATGTTACTGTTAACTGTTCATTTGGGAACAGAGAGGTTTCCACAGATTATGGTTTGTTCATCACATACCCTCTTTATTCTAAGGGCACTTTTGAGTCTATTGCAAAGGATACCAAGCTGGATGCTGAGTTGCTGAAGAGGTACAATTTCAGCCAAGGAAGAGGTTCCATTTTTGTAACAGGTAAAGACAAAAATGGAAGTTATTTGCCCTTTCACTCTAATACAATAGGTTCAATCATCTTACTCCCTCGGAAATTTGGAAGTGGGGCTATTGCCGGAATATCTGTTGGAGTACTAGCAGCGATTTTACTATTGTCGTTTTGTGTGTATATTAAATATTACCTAAAGAAGAAAGTATGGAAGAAAAATTTGACATTGGATGGATCCAAGATGATGAACTCAGATCAAATTGGTACTGATATCACAGACCTTATGGTGGAAAAATCACAAGAGATTTCATACACAGAACTTTCCATTGCCACAAATAAGTTCAGCATGTCTAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTTTATGCAGAGCTTAGAGGCCAGAAAGCCGCTATCAAGAAGATGAAGAAGAAAGCTTCCAAAGAATTTTGTGCTGAATTGAAAGTCTTAACTCGTGTTCATCACTTGAACCTGGTAGGTTTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTTAGTCAAAATCTTCGCGATTTAGAAAGAGAAACTTTGACGTGGTCTACAAGGATGCAAATCGCGCTGGATTCAGCTAGATATCTTGAATATATTCATGAACATACAGAACATGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACCAAAGTTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCTGATGTTGACCATTCAACTTCATCTAATATAATCGCGGAGGGTACATTCGGTTACATGCCACCAGAGTATGATACGCGAGCTGTTATCCGTGATGGACCTGAAGTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTGCTTGGTCATGAACCAGATTCAACAGATGGTCTAAAACCTCTGGTGGATCCTAGACTTGGAGATAACTACTCAATTGATTCAATTTATAAGATGGCACAAATAGCCAAAGCATGTACAATGAATGATCCACAACTACGTCCAAGAAGATATTAA 1662 0.373 MKPIKFRLLLLFLLLAFKFFTAESFCSKTCDIALASYYIQEESLSYISDIRNTLEVSHVNIPFPCDCINGEFLGHTFLYELQVADVIHSMAELTLISLTTEDSVDEWMERNNINATVNCSSGVSKGYGLFITYTLRSKYTLESIPKFMKVNVTVNCSFGNREVSTDYGLFITYPLYSKGTFESIAKDTKLDAELLKRYNFSQGRGSIFVTGKDKNGSYLPFHSNTIGSIILLPRKFGSGAIAGISVGVLAAILLLSFCVYIKYYLKKKVWKKNLTLDGSKMMNSDQIGTDITDLMVEKSQEISYTELSIATNKFSMSNKIGEGGFGEVFYAELRGQKAAIKKMKKKASKEFCAELKVLTRVHHLNLVGLIGYCVEGFLFLVYEYIDNGNFSQNLRDLERETLTWSTRMQIALDSARYLEYIHEHTEHVYIHRDIKSENILLDQSFRAKVADFGLSKLADVDHSTSSNIIAEGTFGYMPPEYDTRAVIRDGPEVKGLVALFDEVLGHEPDSTDGLKPLVDPRLGDNYSIDSIYKMAQIAKACTMNDPQLRPRRY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04425 553 Coils Coil 330 350 - -
Trre10g04425 553 Gene3D Transferase(Phosphotransferase) domain 1 385 552 - -
Trre10g04425 553 Pfam Protein tyrosine and serine/threonine kinase 315 481 IPR001245 GO:0004672|GO:0006468
Trre10g04425 553 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 145 IPR044812 GO:0019199|GO:0045087
Trre10g04425 553 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Trre10g04425 553 SUPERFAMILY Protein kinase-like (PK-like) 294 485 IPR011009 -
Trre10g04425 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Trre10g04425 553 SMART serkin_6 314 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04425 553 ProSiteProfiles Protein kinase domain profile. 314 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04425 553 Gene3D Phosphorylase Kinase; domain 1 285 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04425 Trre-Chr10 53486902 53490040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04425 4 550 Receptor kinase-like Gene Family AT3G21630 42.557 4.74e-150 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre10g04425 PK_Tyr_Ser-Thr 2.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04425 - K13429 mtr:11432279 514.227