Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04424 ATGCAATCCAAAGTTGTTACAAAACCTGAAGATATTGCCATCTACAGCAATGGCACATTAAAAAACATGGACGTTCTCCAAACTGATACAAGATTGACTGTTCCCTTCCCTTGTGAGTGCATCAATGGAGAGCTTCTTGGTCACACATTTTTGTACAAGGCTCAACATGGAGATGATTATGCTTCGATTGCTGAGGTGATTTTTAGTGATTTGACGACTGAGGAGTGGATGGATAGAGCCAACTTTTATTCTTCAAGCAATATTCCTGATAATGCAACTCTTAATATTACTGTTAACTGTTCCTGTGGGAACAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCAAAGGATACCAATCTTGATGCTGAGTTGCTGAAGAGGTACAACCCTGGTGTGGATTTCAGCCAAGGGCATGGTCTTGTGTTTATTCCAGGGAAAGATGAAAATGGAGTTTATGTTCCCATGCCCCCTAGAAAAGCAGGTAATTTAGCTAGGGGTTTAACTGCTGCTGGAATATCGGTTGGAGGAATATGCGTGGTTCTGTTGTTATCAGTTTGTATATATGTTAGATATTATCGAAACAAGAATCGTCAGGAGTCTAAATTTCCACCAAAAGATTCTATGACACCTTCTATTAAAGATGCTGATAAAGATACCAATGGTGATACTGGATCCAAATATATTTTTGTGGACAAATCACCGGAGTTTTCGTACGAAGAGCTAGCCAATGCTACTGATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGCTGAGGTCTACTATGGAGAGCTAAGAGACCAGAAAATTGCAATCAAGAAGATGAAGATGCAGGAAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACAGGAACCTGGTACACTTGATAGGATATTGTGTCGAAGGATATCTATTCCTTGTGTATGAATACATGGAAAATGGAAACTTAAGCCAAAATCTACATAATACAGCAAAAGAACCGATGACATGGTCTACCAGGTTGCAAATTGCTCTGGATGTAGCAAGAGGCCTCGAGTATATTCATGACCATTCGGTGCCTGTATATATCCATCGCGACATAAAATCAGAAAATATTTTATTAAATGAAAACTTAACTGGCAAGATTGCAGATTTCGGATTAACCAAGCTGACTGATATTGCAAGTTCAACAGATAACACTGATCACGTGGCAGGGACATTTGGTTACATGCCTCCCGAAAATGCATATGGACGTATTTCTCGTAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTACGAACTAATTTCTGCCAAAGCAGCTGTGATCAAGATCGATAAAACCAAGTTAGAGTTCAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAAAGCCTTGTAGCTTTGTTTGATGAAGTTATTGACGAAGAAGGAAATCCTATAGAACAAGGACTACAAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCGATTGATTCGATAATAAAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTGTGGTTTCTCTTATGAAACTAAATTCTACAATTGATGATGGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACTATGGAGGGAGCATGA 1713 0.3882 MQSKVVTKPEDIAIYSNGTLKNMDVLQTDTRLTVPFPCECINGELLGHTFLYKAQHGDDYASIAEVIFSDLTTEEWMDRANFYSSSNIPDNATLNITVNCSCGNREVSKDYGLFITYPLRSEDTLESIAKDTNLDAELLKRYNPGVDFSQGHGLVFIPGKDENGVYVPMPPRKAGNLARGLTAAGISVGGICVVLLLSVCIYVRYYRNKNRQESKFPPKDSMTPSIKDADKDTNGDTGSKYIFVDKSPEFSYEELANATDNFSLANKIGQGGFAEVYYGELRDQKIAIKKMKMQETREFLSELKVLTSVHHRNLVHLIGYCVEGYLFLVYEYMENGNLSQNLHNTAKEPMTWSTRLQIALDVARGLEYIHDHSVPVYIHRDIKSENILLNENLTGKIADFGLTKLTDIASSTDNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTKLEFKSLEIKTDESIDEYKSLVALFDEVIDEEGNPIEQGLQKLVDPRLGDNYSIDSIIKLAKTCTNRDPKQRPRMRAVVVSLMKLNSTIDDGSMIVSEALSPTMEGA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04424 570 FunFam PTI1-like tyrosine-protein kinase 3 333 557 - -
Trre10g04424 570 Gene3D Transferase(Phosphotransferase) domain 1 333 561 - -
Trre10g04424 570 MobiDBLite consensus disorder prediction 213 234 - -
Trre10g04424 570 FunFam LysM receptor kinase 2 241 332 - -
Trre10g04424 570 Pfam Protein tyrosine and serine/threonine kinase 264 460 IPR001245 GO:0004672|GO:0006468
Trre10g04424 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Trre10g04424 570 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Trre10g04424 570 Gene3D Phosphorylase Kinase; domain 1 233 332 - -
Trre10g04424 570 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 555 IPR044812 GO:0019199|GO:0045087
Trre10g04424 570 SUPERFAMILY Protein kinase-like (PK-like) 237 545 IPR011009 -
Trre10g04424 570 ProSiteProfiles Protein kinase domain profile. 262 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04424 570 SMART serkin_6 262 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04424 570 CDD LysM 115 147 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04424 Trre-Chr10 53482308 53485257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04424 17 551 Receptor kinase-like Gene Family AT3G21630 49.910 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04424 PK_Tyr_Ser-Thr 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04424 - K13429 tpra:123920651 733.406