Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04422 ATGAAACCTATAAAATTCAGATTATTACTTTTATTCTTGTTACTGGCCTCTAAATCCTTCACTGCAGAATCAACATGTAGCAAAACTTGTGACTTATCTTTAGCTTCCTATTATATATCAGAAGGTACAAACATCACATATATTTCAAACATCATGCAATCCAAAGTTGTTACAAAACCTGAAGATATTGCCATCTACAGCAATGGCACATTAAAAAACATGGACGTTCTCCAAACTGATACAAGATTGACTGTTCCCTTCCCTTGTGAGTGCATCAATGGAGAGCTTCTTGGTCACACATTTTTGTACAAGGCTCAACATGGAGATGATTATGCTTCGATTGCTGAGGTGATTTTTAGTGATTTGACGACTGAGGAGTGGATGGATAGAGCCAACTTTTATTCTTCAAGCAATATTCCTGATAATGCAACTCTTAATATTACTGTTAACTGTTCCTGTGGGAACAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGAGTCTATTGCAAAGGATACCAATCTTGATGCTGAGTTGCTGAAGAGGTACAACCCTGGTGTGGATTTCAGCCAAGGGCATGGTCTTGTGTTTATTCCAGGGAAAGATGAAAATGGAGTTTATGTTCCCATGCCCCCTAGAAAAGCAGGTAATTTAGCTAGGGGTTTAACTGCTGCTGGAATATCGGTTGGAGGAATATGCGTGGTTCTGTTGTTATCAGTTTGTATATATGTTAGATATTATCGAAACAAGAATCGTCAGGAGTCTAAATTTCCACCAAAAGATTCTATGACACCTTCTATTAAAGATGCTGATAAAGATACCAATGGTGATACTGGATCCAAATATATTTTTGTGGACAAATCACCGGAGTTTTCGTACGAAGAGCTAGCCAATGCTACTGATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGCTGAGGTCTACTATGGAGAGCTAAGAGACCAGAAAATTGCAATCAAGAAGATGAAGATGCAGGAAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACAGGAACCTGGTACACTTGATAGGATATTGTGTCGAAGGATATCTATTCCTTGTGTATGAATACATGGAAAATGGAAACTTAAGCCAAAATCTACATAATACAGCAAAAGAACCGATGACATGGTCTACCAGGTTGCAAATTGCTCTGGATGTAGCAAGAGGCCTCGAGTATATTCATGACCATTCGGTGCCTGTATATATCCATCGCGACATAAAATCAGAAAATATTTTATTAAATGAAAACTTAACTGGCAAGATTGCAGATTTCGGATTAACCAAGCTGACTGATATTGCAAGTTCAACAGATAACACTGATCACGTGGCAGGGACATTTGGTTACATGCCTCCCGAAAATGCATATGGACGTATTTCTCGTAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTACGAACTAATTTCTGCCAAAGCAGCTGTGATCAAGATCGATAAAACCAAGTTAGAGTTCAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAAAGCCTTGTAGCTTTGTTTGATGAAGTTATTGACGAAGAAGGAAATCCTATAGAACAAGGACTACAAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCGATTGATTCGATAATAAAGATGACACAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTGTGGTTTCTCTTATGAAACTAAATTCTACAATTGATGATGGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACTATGGAGGGAGCATGA 1875 0.3813 MKPIKFRLLLLFLLLASKSFTAESTCSKTCDLSLASYYISEGTNITYISNIMQSKVVTKPEDIAIYSNGTLKNMDVLQTDTRLTVPFPCECINGELLGHTFLYKAQHGDDYASIAEVIFSDLTTEEWMDRANFYSSSNIPDNATLNITVNCSCGNREVSKDYGLFITYPLRSEDTLESIAKDTNLDAELLKRYNPGVDFSQGHGLVFIPGKDENGVYVPMPPRKAGNLARGLTAAGISVGGICVVLLLSVCIYVRYYRNKNRQESKFPPKDSMTPSIKDADKDTNGDTGSKYIFVDKSPEFSYEELANATDNFSLANKIGQGGFAEVYYGELRDQKIAIKKMKMQETREFLSELKVLTSVHHRNLVHLIGYCVEGYLFLVYEYMENGNLSQNLHNTAKEPMTWSTRLQIALDVARGLEYIHDHSVPVYIHRDIKSENILLNENLTGKIADFGLTKLTDIASSTDNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTKLEFKSLEIKTDESIDEYKSLVALFDEVIDEEGNPIEQGLQKLVDPRLGDNYSIDSIIKMTQLAKTCTNRDPKQRPRMRAVVVSLMKLNSTIDDGSMIVSEALSPTMEGA 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04422 624 CDD LysM 166 198 IPR018392 -
Trre10g04422 624 SMART serkin_6 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04422 624 FunFam LysM receptor kinase 2 292 383 - -
Trre10g04422 624 Gene3D Phosphorylase Kinase; domain 1 284 383 - -
Trre10g04422 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Trre10g04422 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 609 IPR044812 GO:0019199|GO:0045087
Trre10g04422 624 SUPERFAMILY Protein kinase-like (PK-like) 288 599 IPR011009 -
Trre10g04422 624 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Trre10g04422 624 Gene3D Transferase(Phosphotransferase) domain 1 384 615 - -
Trre10g04422 624 ProSiteProfiles Protein kinase domain profile. 313 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04422 624 FunFam PTI1-like tyrosine-protein kinase 3 384 611 - -
Trre10g04422 624 MobiDBLite consensus disorder prediction 264 285 - -
Trre10g04422 624 Pfam Protein tyrosine and serine/threonine kinase 315 510 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04422 Trre-Chr10 53482155 53485257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04422 4 605 Receptor kinase-like Gene Family AT3G21630 48.226 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04422 PK_Tyr_Ser-Thr 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04422 - K13429 tpra:123920651 767.303