Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04421 ATGGAACTTAGATACATCTTCTCACTTACCTTCATGTTACTATCTTCAACATCATTCACAACAGAATCAAAGTGTAACAAAGGTTGTAATTTAGCTCTAGCTTCTTATACCTTAACTAACAGTGTCAACCTTACATATATTTCAAACATTATGAAATCTAATGTTCTTACAAAACCTCAAGATATCATCACCATCACCAACACCAACAGCAAAAGCAAAAGCAAAAGCAAAAGAGTTAATGTTCCATTCCCTTGTGATTGCATCAATGGAGAATTTCTTGCTCATACCTTTATATATCAGTTTCAGCCAGGTGAAACATATACATCAGTTGTAGAAGATGACTTTTCTAATTTGACAACTGATGTTTGGGTGCAAAACTTCAACATTTATAGACCAACAAATATTCCTGATTTTGGAATGATTAATGTTAGTATTAATTGTTCCTGTGGGAACAGTAAGGTTTCTAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGAGGATACTTTGGAGTCTATTGCAAAGGATACCGAGATTGATGCTGATTTGTTGCAGAGGTATAACCCTGGTGTGAATTTCAGCCAAGGAAGTGGTCTTGTTTTTATTCCAGGGAAAGATCAAAATGGAAGCTATATGCCCCTTCGCTCGAGCACAATAGGAGTTGTGGCTATTGTTGGAATATCTGTTGGAGTACTAGCAGGACTTTTAGTACTGTCGATTTGTGTTTATATTAAATATTACCTAAAGAAAAAGGCATGGCAGAAGAAAAATTTGATCTTGGATGATCCCAACATGAACTCGGATCAAACCGGTACTCACATCACAGGCATTATAGTGGAAAACTCACTAGAGTTTTCATATCAAGAATTATGTGTTGCTACAAATAACTTCAGGGTCGATAATAAAATTGGCGAAGGTGGTTTTGGAGAAGTCTTTTATGCCGAGCTGCGAGGACAGATATCCGCTGTCAAGAAAATGAAGATGAAAGCATCCAAAGAATTTTACGCTGAATTGAAAATCTTATCTCGTGTTCATCATTTGAACCTGGTAGGGTTGATTGGATATTGTGTTGATGGTTGTCTCTTTCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAAAGAGAACCTTTGGCATGGTCTACAAGGATGCAAATCGCTCTTGATTCAGCCCGAGGTCTTGAATATATTCATGAGCATACTGTGCGTGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCTGAAGTTGAAAATTCAACTTCATCTGCTATAGTTGCGGAGGGTACATTCGGTTACATGCCACCAGAATATGCGCATGGTGTTATCGCCCTTTCTCCAAAAATAGACGTCTATGCATTTGGAGTTGTTCTATATGAACTAATTTCTGCTAATCCAGCTGTAATTAATGATGGTCCTGAAGTAAAAGGCCTTGTAGCTATGTTTGGTGAAGTGCTTGATCATGAACCGAATCCGACAGAAGCTCTTAAAAATCTGGTGGATCCTAGACTTGGAGATAACTACTCAATTGATTCAGTTTACAATATAGCAAAACTAGCCAAAGCATGTACAATGAAGGATCCACAATTACGTCCAAGCATGAGATCCGTTGTCGTTGCTCTTATGACACTAACTTCTACCACCGAGGATTGGAATATTTCATCTTTTTTTGAAAATCCAGTTTTTGTAAATTTAATGTCTGGAAAATAG 1794 0.3679 MELRYIFSLTFMLLSSTSFTTESKCNKGCNLALASYTLTNSVNLTYISNIMKSNVLTKPQDIITITNTNSKSKSKSKRVNVPFPCDCINGEFLAHTFIYQFQPGETYTSVVEDDFSNLTTDVWVQNFNIYRPTNIPDFGMINVSINCSCGNSKVSKDYGLFITYPLRSEDTLESIAKDTEIDADLLQRYNPGVNFSQGSGLVFIPGKDQNGSYMPLRSSTIGVVAIVGISVGVLAGLLVLSICVYIKYYLKKKAWQKKNLILDDPNMNSDQTGTHITGIIVENSLEFSYQELCVATNNFRVDNKIGEGGFGEVFYAELRGQISAVKKMKMKASKEFYAELKILSRVHHLNLVGLIGYCVDGCLFLVYEYIDNGNLSQNLRDLEREPLAWSTRMQIALDSARGLEYIHEHTVRVYIHRDIKSENILLDKNFRAKVADFGLSKLAEVENSTSSAIVAEGTFGYMPPEYAHGVIALSPKIDVYAFGVVLYELISANPAVINDGPEVKGLVAMFGEVLDHEPNPTEALKNLVDPRLGDNYSIDSVYNIAKLAKACTMKDPQLRPSMRSVVVALMTLTSTTEDWNISSFFENPVFVNLMSGK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04421 597 SMART serkin_6 299 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04421 597 FunFam LysM receptor kinase 2 278 369 - -
Trre10g04421 597 FunFam PTI1-like tyrosine-protein kinase 3 370 583 - -
Trre10g04421 597 Gene3D Transferase(Phosphotransferase) domain 1 370 586 - -
Trre10g04421 597 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 582 IPR044812 GO:0019199|GO:0045087
Trre10g04421 597 SUPERFAMILY Protein kinase-like (PK-like) 276 569 IPR011009 -
Trre10g04421 597 ProSiteProfiles Protein kinase domain profile. 299 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04421 597 Gene3D Phosphorylase Kinase; domain 1 270 369 - -
Trre10g04421 597 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Trre10g04421 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Trre10g04421 597 Pfam Protein tyrosine and serine/threonine kinase 301 567 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04421 Trre-Chr10 53463351 53466931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04421 1 597 Receptor kinase-like Gene Family AT3G21630 50.883 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04421 PK_Tyr_Ser-Thr 6.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04421 - K13429 mtr:11432279 700.279