Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04420 ATGCAATCAAATCTTGTTACAAAACCAGAAGATATTGTCAGCTACAACACAGACACAATAAAAAGCAAAGATTCTGTTCAATCTTTTACAAGAGTTAATGTTCCATTTCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCAATACCATGTTGTAAGAGGAGATACATATTTGTCTGTTGCAAACAATACTTATTCCAATTTAACAACAGCTGAATTGTTGAATAGCTTTAATATCTATCAATCTAATGATATTCCTGATACTGCAACTCTTAATGTTACTGTTAATTGTTCTTGTGGGAATAGTGATGTTTCTAAGGATTATGGTTTGTTTATTACTTACCCTCTTAGAAGTGAAGATTCTTTGCAATTGATTTCTAATAAGACTCAAATTGATGCTGATGTTTTGCAAAAGTATAATCCTGGTGTCAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGAAAAGACCAAAATGGTAACTATGTTCCTTTTCACACAAGCACCGGAGGCCTATCAGGTGGAGTTATTACTGGAATATCTATTGGAGCTGTAGCAGGACTATTGCTATTAGCACTTTGTATTTACGTTACATATTACCGAAAGAAGAAAGTACGGAAGCAAACTTCGCACTCAGAAGAATCCAGCGCGACCTTCGCTCAAGTTAAGAATGACGAAGTCTCTGGTAATGCTACATACGGAACTTCAGATTCTGCGAGTCCTGGTAATATGATTGGCATTAGGGTGGAAAAATCAGGGGAGTTTTCATATGAAGAACTAGCTAATGCCACAAATAACTTCAATATGGCTAATAAAATCGGTCAAGGTGGTTTCGGTGAAGTCTTTTACGCAGAACTGAACGGCGAGAAAGCTGCAATAAAAAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAGCTTAAGGTGTTGACACGCGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGCGTCGAGGGATCCCTTTTTCTTGTCTATGAATACATTAATAATGGAAACTTAAGCCAACATCTACGCAGTTCAGACGGAGAACCATTGCAATGGTCTACTAGGGCTAAAATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACCGTGCCTACATATATTCATCGTGACATAAAGCCAGAAAATATTTTATTAGACAAAAACTTCCGTGCTAAGGTTGCAGATTTTGGATTAACTAAGCTGATTGAAGCTGGAACTGCATCGGTTCCAACTGCTAATATGGCAGGCACATTTGGTTACATGCCACCAGAATATGCATATGGAAGTGTTTCTTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTATATGAACTAATTTCTGCTAAAAGAGCTATAATAATGGGTGCTGAATTAAAGGGTCTTGTAGCTTTGTTTGATGAAGTTTTTGATGGTCCAAATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAAACTTGGAGATAACTATTCAATTGATTCAATTTTCAAGATGGCACAAATTGGCAAAGTATGTACTGAGAGTGATCCACGACAACGTCCAAATATGAGCTCTGTTGTAGTTGCACTTACCACGTTAACTTCAACTACTGAGGATTGGGATATCACTTCTATATATAAAAATTCAAATCTTGTAAATTTAATGTCTGGAAAATAG 1698 0.3645 MQSNLVTKPEDIVSYNTDTIKSKDSVQSFTRVNVPFPCDCINDEFLGHTFQYHVVRGDTYLSVANNTYSNLTTAELLNSFNIYQSNDIPDTATLNVTVNCSCGNSDVSKDYGLFITYPLRSEDSLQLISNKTQIDADVLQKYNPGVNFSQGSGLVYIPGKDQNGNYVPFHTSTGGLSGGVITGISIGAVAGLLLLALCIYVTYYRKKKVRKQTSHSEESSATFAQVKNDEVSGNATYGTSDSASPGNMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVFYAELNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSDGEPLQWSTRAKIALDSARGLEYIHEHTVPTYIHRDIKPENILLDKNFRAKVADFGLTKLIEAGTASVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKRAIIMGAELKGLVALFDEVFDGPNPIEGLKKLVDPKLGDNYSIDSIFKMAQIGKVCTESDPRQRPNMSSVVVALTTLTSTTEDWDITSIYKNSNLVNLMSGK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04420 565 SMART serkin_6 271 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04420 565 ProSiteProfiles Protein kinase domain profile. 271 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04420 565 FunFam LysM receptor kinase 2 250 341 - -
Trre10g04420 565 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Trre10g04420 565 SUPERFAMILY Protein kinase-like (PK-like) 252 537 IPR011009 -
Trre10g04420 565 FunFam PTI1-like tyrosine-protein kinase 3 342 551 - -
Trre10g04420 565 Gene3D Transferase(Phosphotransferase) domain 1 342 558 - -
Trre10g04420 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Trre10g04420 565 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 551 IPR044812 GO:0019199|GO:0045087
Trre10g04420 565 Gene3D Phosphorylase Kinase; domain 1 245 341 - -
Trre10g04420 565 Pfam Protein tyrosine and serine/threonine kinase 272 535 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04420 Trre-Chr10 53456420 53460638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04420 10 565 Receptor kinase-like Gene Family AT3G21630 57.041 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04420 PK_Tyr_Ser-Thr 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04420 - K13429 mtr:11432279 967.992