Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04419 ATGAAACAAACCAAATTCATATCATCATTTTTATTCTTATTATTACTAGCCACAAAATCTTTCATAGCAGAATCAAAATGTAGCAAAACTTGTGACATAGCTTTAGCTTCATATTATCTAACAAATGATTCATATTCAAATCTCACATATGTTTCAAAAATCATGCAATCAAATCTTGTTACAAAACCAGAAGATATTGTCAGCTACAACACAGACACAATAAAAAGCAAAGATTCTGTTCAATCTTTTACAAGAGTTAATGTTCCATTTCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCAATACCATGTTGTAAGAGGAGATACATATTTGTCTGTTGCAAACAATACTTATTCCAATTTAACAACAGCTGAATTGTTGAATAGCTTTAATATCTATCAATCTAATGATATTCCTGATACTGCAACTCTTAATGTTACTGTTAATTGTTCTTGTGGGAATAGTGATGTTTCTAAGGATTATGGTTTGTTTATTACTTACCCTCTTAGAAGTGAAGATTCTTTGCAATTGATTTCTAATAAGACTCAAATTGATGCTGATGTTTTGCAAAAGTATAATCCTGGTGTCAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGAAAAGACCAAAATGGTAACTATGTTCCTTTTCACACAAGCACCGGAGGCCTATCAGGTGGAGTTATTACTGGAATATCTATTGGAGCTGTAGCAGGACTATTGCTATTAGCACTTTGTATTTACGTTACATATTACCGAAAGAAGAAAGTACGGAAGCAAACTTCGCACTCAGAAGAATCCAGCGCGACCTTCGCTCAAGTTAAGAATGACGAAGTCTCTGGTAATGCTACATACGGAACTTCAGATTCTGCGAGTCCTGGTAATATGATTGGCATTAGGGTGGAAAAATCAGGGGAGTTTTCATATGAAGAACTAGCTAATGCCACAAATAACTTCAATATGGCTAATAAAATCGGTCAAGGTGGTTTCGGTGAAGTCTTTTACGCAGAACTGAACGGCGAGAAAGCTGCAATAAAAAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAGCTTAAGGTGTTGACACGCGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGCGTCGAGGGATCCCTTTTTCTTGTCTATGAATACATTAATAATGGAAACTTAAGCCAACATCTACGCAGTTCAGACGGAGAACCATTGCAATGGTCTACTAGGGCTAAAATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACCGTGCCTACATATATTCATCGTGACATAAAGCCAGAAAATATTTTATTAGACAAAAACTTCCGTGCTAAGGTTGCAGATTTTGGATTAACTAAGCTGATTGAAGCTGGAACTGCATCGGTTCCAACTGCTAATATGGCAGGCACATTTGGTTACATGCCACCAGAATATGCATATGGAAGTGTTTCTTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTATATGAACTAATTTCTGCTAAAAGAGCTATAATAATGGGTGCTGAATTAAAGGGTCTTGTAGCTTTGTTTGATGAAGTTTTTGATGGTCCAAATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAAACTTGGAGATAACTATTCAATTGATTCAATTTTCAAGATGGCACAAATTGGCAAAGTATGTACTGAGAGTGATCCACGACAACGTCCAAATATGAGCTCTGTTGTAGTTGCACTTACCACGTTAACTTCAACTACTGAGGATTGGGATATCACTTCTATATATAAAAATTCAAATCTTGTAAATTTAATGTCTGGAAAATAG 1860 0.3554 MKQTKFISSFLFLLLLATKSFIAESKCSKTCDIALASYYLTNDSYSNLTYVSKIMQSNLVTKPEDIVSYNTDTIKSKDSVQSFTRVNVPFPCDCINDEFLGHTFQYHVVRGDTYLSVANNTYSNLTTAELLNSFNIYQSNDIPDTATLNVTVNCSCGNSDVSKDYGLFITYPLRSEDSLQLISNKTQIDADVLQKYNPGVNFSQGSGLVYIPGKDQNGNYVPFHTSTGGLSGGVITGISIGAVAGLLLLALCIYVTYYRKKKVRKQTSHSEESSATFAQVKNDEVSGNATYGTSDSASPGNMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVFYAELNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSDGEPLQWSTRAKIALDSARGLEYIHEHTVPTYIHRDIKPENILLDKNFRAKVADFGLTKLIEAGTASVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLYELISAKRAIIMGAELKGLVALFDEVFDGPNPIEGLKKLVDPKLGDNYSIDSIFKMAQIGKVCTESDPRQRPNMSSVVVALTTLTSTTEDWDITSIYKNSNLVNLMSGK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04419 619 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672|GO:0006468
Trre10g04419 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 11 605 IPR044812 GO:0019199|GO:0045087
Trre10g04419 619 Gene3D Phosphorylase Kinase; domain 1 299 395 - -
Trre10g04419 619 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Trre10g04419 619 SUPERFAMILY Protein kinase-like (PK-like) 306 591 IPR011009 -
Trre10g04419 619 SMART serkin_6 325 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04419 619 FunFam PTI1-like tyrosine-protein kinase 3 396 605 - -
Trre10g04419 619 ProSiteProfiles Protein kinase domain profile. 325 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04419 619 FunFam LysM receptor kinase 2 304 395 - -
Trre10g04419 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Trre10g04419 619 Gene3D Transferase(Phosphotransferase) domain 1 396 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04419 Trre-Chr10 53456258 53460638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04419 13 619 Receptor kinase-like Gene Family AT3G21630 54.854 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g04419 PK_Tyr_Ser-Thr 9.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04419 - K13429 mtr:11432279 1028.85