Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04411 ATGTTAGGGTTTGGAGGACAAAGTTGCAGTGAGATTTCATCTATGGAACATAATCATATGATGAACATGGAAACTAATGTTATTAATAGGAAGTTTTTTTCATTTCCTTTGAGTAACAATAACTCTTCTGGTGTTCAAGTTCATCATAATAACTACAACCAACATCAGAACAACAACAACAACAACACTTCTTCAAATGTTGTTGTTAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTGGAAGAGTCATGTGCAAGATGTGAAGCTGTGAATGGCTCATCAGGAAGGAGTAGTTCTTGCATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACTAAGCCCTTCAAAGAAGCTATGCTTTTTCTTTCAAGAATTGAGTCTCAGCTTAAGTCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAACCAGCTTCACATAATGAGATTGATATGCATGAGAACAACCTTGATACTCAAGGTGAAGATCAGGAATTAAAAGTGCAGCTTTTGCGCAAGTATAGTGGATATCTTGGCGGTCTCAAGAAAGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGGCAGCAACTACTTGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAAACTCAAAAGCAAGCACTAGCAGAATCCACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAAAGAAAACGTCACTGGAAACCTTCTGAGGATATGCAATATGCTGTGATGGATGCAACAAACTACTACATGGAAAATGTCATGTGCAAATCATTTCCTATGGATGCTCCCATGCCTATGCTTCTTTAG 954 0.3941 MLGFGGQSCSEISSMEHNHMMNMETNVINRKFFSFPLSNNNSSGVQVHHNNYNQHQNNNNNNTSSNVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCARCEAVNGSSGRSSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKSLAVSTDFGQSEPASHNEIDMHENNLDTQGEDQELKVQLLRKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSETQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQYAVMDATNYYMENVMCKSFPMDAPMPMLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04411 317 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Trre10g04411 317 Gene3D - 218 295 - -
Trre10g04411 317 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Trre10g04411 317 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Trre10g04411 317 SMART KNOX2_2 119 170 IPR005541 GO:0003677|GO:0005634
Trre10g04411 317 Pfam KNOX1 domain 69 109 IPR005540 GO:0003677|GO:0005634
Trre10g04411 317 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Trre10g04411 317 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Trre10g04411 317 CDD homeodomain 232 284 IPR001356 GO:0003677
Trre10g04411 317 SMART ELK_2 200 221 IPR005539 GO:0003677
Trre10g04411 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 118 290 - -
Trre10g04411 317 SMART HOX_1 222 287 IPR001356 GO:0003677
Trre10g04411 317 Pfam KNOX2 domain 122 168 IPR005541 GO:0003677|GO:0005634
Trre10g04411 317 SUPERFAMILY Homeodomain-like 222 294 IPR009057 -
Trre10g04411 317 Pfam ELK domain 200 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04411 Trre-Chr10 53356729 53360293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04411 43 310 Homeobox Transcription Factor Family AT1G62360 63.830 3.47e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre10g04411 KNOX2 4.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04411 - - mtr:11431352 487.648