Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04405 ATGTTTTTCAATTCTTTTTTAAAGCTCTCTACCCTCCAAGTTTATGGCATTCTCATTTTTTCTTCTTTTGCTTTTGCTGCCACTACAACTATAGAACATCAAGGCAATGAAGCAATTGCTCTATTAAATTGGAAAACCAACCTTGATAAACAAAGCCAAGCTTCCTTGTCTTCTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAAGGGATTGTTTGTCATGAAAAAACCAATTATGTGACAATTATAAATGTTGCTAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTCAACTTCTCATCTTTTCCTATGCTTCAAACTTTGGATATAAGTAACAACTTTTTTCATGGTACTATTCCACATCAAATTGGTAACTTGTCCAAAATTTCTAAACTAAAAATGAGCCATAATCTTTTCAATGGTTCCATTCCACAAGAAATAGGGAAATTGAAAAATCTAAGTCACCTTGATATTGTAAGTTGTAAGCTCATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCTGCTAATTATCTAACCGGCGAAATTCCTTCGGTAAAAAACTTGATGAACTTACAACGACTTGTTTTATACGGAAACTCTCTTTCTGGACCGATTCCTATGGATTTAGGCGCAATCTCTTCTCTTAGAACAATTAAATTGTTACGCAACAATTTTTCCGGTGAAATTCCATCTTCCATAGGAAACTTGAATAATTTGAGGATACTTCAGCTTAGTTATAATCAACTTCATGGATCAATTCCTTCTACTATTGGAAACTTGACAAAACTCATTCAATTATCACTTTCTGAAAACCATATTTCTGGATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAAAGCTTAGTCTTTCAGAAAATCATCTTTCTGGTCCTATTCCTTCAACCTTTAGAAATTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAACTAAGTTCAAATCATTTCACTGGTGAATTGCCACATCAAATTTGCTTTGGTGGTTCACTTAGAAATTTTTCTGCTAATCAGAATCATTTCAGTGGTTTAGTTCCAATAACCTTGAAGAATTGTTCAAGCCTTGTTAGATTTAACCTTGCAGAAAATATGTTGAATGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTGAACTACATTGATTTGAGTCACAATAAATTTTCTGGCAAAATTTTGCCAAGTTGGATAAAAAGTCATAATCTAATTGGCCTAATAATCTCAAATAATAATTTATCAGGTCCTATACCTCCAGAACTAGGACAAGCATCTAAGTTACAATTACTTCAACTCTCTTCAAATCATTTAACAGGAAAAATTCCTAAAGAGCTTTCTAACTTGACTTCATTGTATGAACTCTCCATGAGTAACAATGAACTTTCTGGAAACATTCCTATAGAAATAGGATCCATGCAAGGACTTAGAAACTTGAGTCTTGCAGAAAATAATTTAAGTGGCTCAATTCCAAAACAAATTGGAAATCTTGTCAAACTAGTTCATTTGAATTTGAGCAATAATAGGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGTTAAGTGGACAAATACCAGAAGAAGTTGGAAAGTTGCAAAAGTTGAACACATTGAACCTCTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTGAAGATATGATTAGCTTGACAAATGTTGACATATCTTATAACCAATTAGAGGGTCCAATTCCTAACACAAAAGTGTTTCTTAATGCAACATTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGCAAGTCATCAAAACACAAAAAGTAAACACAAAAGTGTGATATTGACACTCTTTCTATTTCTTATAGTCTTCTTGGTTGGTGCTTTTTTGTATATTCATTGGAAAAAAGCAAGAAAAATTAAAAATCAAGCAAGAGAAGAACAAGAACAAAAACAAACTCAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGTGAAGGAGGTTCTGGTTTTGTTTACAAGGCTAATTTACCTTCCGGTCAAGTTGTTGCTGTGAAAAAACTTCATGCTGAAGTTGATAGTGAAATGAACAATTTCACGGCTTTTACTAATGAGGTTAAAGCGTTGACGCAAATCAAACATCGTAACATTGTGAAGTTATATGGATTTTGTTTGCATCGGCGTCACTCTTTTGTGGTTTATAAGTTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACGATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTTTCCTCCTATTGTTCATCGCGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATCTTGATTCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTAATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCAGGAGATCTGATTTCTACATTGTTTTCATCATCTGAAGCACCAAAAGCATATAATTTGCTATTGAAAGATGTATTAGACCAAAGAATTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTAATGTTGATTTCAAAAATGGGATTTGCTTGCTTGAGTGAAAATCCACATTCTAGACCAACTATGGAACAAGTTTATAACATGTTTGTGATGCCAAAACCACCATCAATGGAGACATTCCACGTCGTCACACTTGGTCAACTTTTAAATTAG 3069 0.335 MFFNSFLKLSTLQVYGILIFSSFAFAATTTIEHQGNEAIALLNWKTNLDKQSQASLSSWSIISSPCNWKGIVCHEKTNYVTIINVANFGLKGTLLSLNFSSFPMLQTLDISNNFFHGTIPHQIGNLSKISKLKMSHNLFNGSIPQEIGKLKNLSHLDIVSCKLIGSIPSTIGMLINLVELDLSANYLTGEIPSVKNLMNLQRLVLYGNSLSGPIPMDLGAISSLRTIKLLRNNFSGEIPSSIGNLNNLRILQLSYNQLHGSIPSTIGNLTKLIQLSLSENHISGSIPSSLGNLINLEKLSLSENHLSGPIPSTFRNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNHFTGELPHQICFGGSLRNFSANQNHFSGLVPITLKNCSSLVRFNLAENMLNGNISDDFGVYPNLNYIDLSHNKFSGKILPSWIKSHNLIGLIISNNNLSGPIPPELGQASKLQLLQLSSNHLTGKIPKELSNLTSLYELSMSNNELSGNIPIEIGSMQGLRNLSLAENNLSGSIPKQIGNLVKLVHLNLSNNRFMEGIPHEFNRLQSLEDLDLGGNLLSGQIPEEVGKLQKLNTLNLSHNNLSGNIPSNFEDMISLTNVDISYNQLEGPIPNTKVFLNATFEALRNNKGLCGNSSSLVPCVASHQNTKSKHKSVILTLFLFLIVFLVGAFLYIHWKKARKIKNQAREEQEQKQTQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGFVYKANLPSGQVVAVKKLHAEVDSEMNNFTAFTNEVKALTQIKHRNIVKLYGFCLHRRHSFVVYKFLEGGSLDNVMRLDTQATMFDWKKRVNVVKGVTNALYHMHHGCFPPIVHRDISSKNVLLDLDCEAYISDFGTAKILNLDSHNSTTFAGTYGYAAPELAYTNEVNEKCDVFSFGVLCLEIIIGKHPGDLISTLFSSSEAPKAYNLLLKDVLDQRIPLPENSVAKDVMLISKMGFACLSENPHSRPTMEQVYNMFVMPKPPSMETFHVVTLGQLLN 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04405 1022 SUPERFAMILY L domain-like 368 644 - -
Trre10g04405 1022 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Trre10g04405 1022 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Trre10g04405 1022 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515
Trre10g04405 1022 Gene3D Ribonuclease Inhibitor 196 264 IPR032675 -
Trre10g04405 1022 Gene3D Ribonuclease Inhibitor 365 654 IPR032675 -
Trre10g04405 1022 FunFam MDIS1-interacting receptor like kinase 2 810 1007 - -
Trre10g04405 1022 ProSiteProfiles Protein kinase domain profile. 731 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04405 1022 FunFam Nuclear pore complex protein NUP107 34 193 - -
Trre10g04405 1022 ProSitePatterns Protein kinases ATP-binding region signature. 737 760 IPR017441 GO:0005524
Trre10g04405 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 341 656 - -
Trre10g04405 1022 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Trre10g04405 1022 SUPERFAMILY L domain-like 59 403 - -
Trre10g04405 1022 SUPERFAMILY Protein kinase-like (PK-like) 708 1001 IPR011009 -
Trre10g04405 1022 ProSitePatterns Tyrosine protein kinases specific active-site signature. 855 867 IPR008266 GO:0004672|GO:0006468
Trre10g04405 1022 Gene3D Phosphorylase Kinase; domain 1 690 809 - -
Trre10g04405 1022 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 337 - -
Trre10g04405 1022 SMART LRR_typ_2 293 316 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 341 365 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 533 556 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 557 580 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 102 126 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 581 604 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 245 269 IPR003591 -
Trre10g04405 1022 SMART LRR_typ_2 485 509 IPR003591 -
Trre10g04405 1022 Gene3D Transferase(Phosphotransferase) domain 1 810 1007 - -
Trre10g04405 1022 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Trre10g04405 1022 Pfam Protein kinase domain 733 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04405 1022 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 316 1003 - -
Trre10g04405 1022 Gene3D Ribonuclease Inhibitor 265 364 IPR032675 -
Trre10g04405 1022 FunFam Leucine-rich repeat receptor protein kinase MSP1 694 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04405 Trre-Chr10 53288946 53293591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04405 8 903 Receptor kinase-like Gene Family AT4G08850 44.551 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04405 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04405 - - gmx:100800924 1278.85