Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04404 ATGTCCACAAAGCTTCTGTCTTTTCATTTTATTCTCATCATGTTTTTCAATTCTTTTTTAAAGCTCTCTACCCTCCAAGTTTATGGCATTCTCATTTTTTCTTCTTTTGCTTTTGCTGCCACTACAACTATAGAACATCAAGGCAATGAAGCAATTGCTCTATTAAATTGGAAAACCAACCTTGATAAACAAAGCCAAGCTTCCTTGTCTTCTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAAGGGATTGTTTGTCATGAAAAAACCAATTATGTGACAATTATAAATGTTGCTAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTCAACTTCTCATCTTTTCCTATGCTTCAAACTTTGGATATAAGTAACAACTTTTTTCATGGTACTATTCCACATCAAATTGGTAACTTGTCCAAAATTTCTAAACTAAAAATGAGCCATAATCTTTTCAATGGTTCCATTCCACAAGAAATAGGGAAATTGAAAAATCTAAGTCACCTTGATATTGTAAGTTGTAAGCTCATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCTGCTAATTATCTAACCGGCGAAATTCCTTCGGTAAAAAACTTGATGAACTTACAACGACTTGTTTTATACGGAAACTCTCTTTCTGGACCGATTCCTATGGATTTAGGCGCAATCTCTTCTCTTAGAACAATTAAATTGTTACGCAACAATTTTTCCGGTGAAATTCCATCTTCCATAGGAAACTTGAATAATTTGAGGATACTTCAGCTTAGTTATAATCAACTTCATGGATCAATTCCTTCTACTATTGGAAACTTGACAAAACTCATTCAATTATCACTTTCTGAAAACCATATTTCTGGATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAAAGCTTAGTCTTTCAGAAAATCATCTTTCTGGTCCTATTCCTTCAACCTTTAGAAATTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAACTAAGTTCAAATCATTTCACTGGTGAATTGCCACATCAAATTTGCTTTGGTGGTTCACTTAGAAATTTTTCTGCTAATCAGAATCATTTCAGTGGTTTAGTTCCAATAACCTTGAAGAATTGTTCAAGCCTTGTTAGATTTAACCTTGCAGAAAATATGTTGAATGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTGAACTACATTGATTTGAGTCACAATAAATTTTCTGGCAAAATTTTGCCAAGTTGGATAAAAAGTCATAATCTAATTGGCCTAATAATCTCAAATAATAATTTATCAGGTCCTATACCTCCAGAACTAGGACAAGCATCTAAGTTACAATTACTTCAACTCTCTTCAAATCATTTAACAGGAAAAATTCCTAAAGAGCTTTCTAACTTGACTTCATTGTATGAACTCTCCATGAGTAACAATGAACTTTCTGGAAACATTCCTATAGAAATAGGATCCATGCAAGGACTTAGAAACTTGAGTCTTGCAGAAAATAATTTAAGTGGCTCAATTCCAAAACAAATTGGAAATCTTGTCAAACTAGTTCATTTGAATTTGAGCAATAATAGGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGTTAAGTGGACAAATACCAGAAGAAGTTGGAAAGTTGCAAAAGTTGAACACATTGAACCTCTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTGAAGATATGATTAGCTTGACAAATGTTGACATATCTTATAACCAATTAGAGGGTCCAATTCCTAACACAAAAGTGTTTCTTAATGCAACATTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGCAAGTCATCAAAACACAAAAAGTAAACACAAAAGTGTGATATTGACACTCTTTCTATTTCTTATAGTCTTCTTGGTTGGTGCTTTTTTGTATATTCATTGGAAAAAAGCAAGAAAAATTAAAAATCAAGCAAGAGAAGAACAAGAACAAAAACAAACTCAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGTGAAGGAGGTTCTGGTTTTGTTTACAAGGCTAATTTACCTTCCGGTCAAGTTGTTGCTGTGAAAAAACTTCATGCTGAAGTTGATAGTGAAATGAACAATTTCACGGCTTTTACTAATGAGGTTAAAGCGTTGACGCAAATCAAACATCGTAACATTGTGAAGTTATATGGATTTTGTTTGCATCGGCGTCACTCTTTTGTGGTTTATAAGTTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACGATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTTTCCTCCTATTGTTCATCGCGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATCTTGATTCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTAATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCAGGAGATCTGATTTCTACATTGTTTTCATCATCTGAAGCACCAAAAGCATATAATTTGCTATTGAAAGATGTATTAGACCAAAGAATTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTAATGTTGATTTCAAAAATGGGATTTGCTTGCTTGAGTGAAAATCCACATTCTAGACCAACTATGGAACAAGTTTATAACATGTTTGTGATGCCAAAACCACCATCAATGGAGACATTCCACGTCGTCACACTTGGTCAACTTTTAAATTAG 3108 0.3349 MSTKLLSFHFILIMFFNSFLKLSTLQVYGILIFSSFAFAATTTIEHQGNEAIALLNWKTNLDKQSQASLSSWSIISSPCNWKGIVCHEKTNYVTIINVANFGLKGTLLSLNFSSFPMLQTLDISNNFFHGTIPHQIGNLSKISKLKMSHNLFNGSIPQEIGKLKNLSHLDIVSCKLIGSIPSTIGMLINLVELDLSANYLTGEIPSVKNLMNLQRLVLYGNSLSGPIPMDLGAISSLRTIKLLRNNFSGEIPSSIGNLNNLRILQLSYNQLHGSIPSTIGNLTKLIQLSLSENHISGSIPSSLGNLINLEKLSLSENHLSGPIPSTFRNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNHFTGELPHQICFGGSLRNFSANQNHFSGLVPITLKNCSSLVRFNLAENMLNGNISDDFGVYPNLNYIDLSHNKFSGKILPSWIKSHNLIGLIISNNNLSGPIPPELGQASKLQLLQLSSNHLTGKIPKELSNLTSLYELSMSNNELSGNIPIEIGSMQGLRNLSLAENNLSGSIPKQIGNLVKLVHLNLSNNRFMEGIPHEFNRLQSLEDLDLGGNLLSGQIPEEVGKLQKLNTLNLSHNNLSGNIPSNFEDMISLTNVDISYNQLEGPIPNTKVFLNATFEALRNNKGLCGNSSSLVPCVASHQNTKSKHKSVILTLFLFLIVFLVGAFLYIHWKKARKIKNQAREEQEQKQTQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGFVYKANLPSGQVVAVKKLHAEVDSEMNNFTAFTNEVKALTQIKHRNIVKLYGFCLHRRHSFVVYKFLEGGSLDNVMRLDTQATMFDWKKRVNVVKGVTNALYHMHHGCFPPIVHRDISSKNVLLDLDCEAYISDFGTAKILNLDSHNSTTFAGTYGYAAPELAYTNEVNEKCDVFSFGVLCLEIIIGKHPGDLISTLFSSSEAPKAYNLLLKDVLDQRIPLPENSVAKDVMLISKMGFACLSENPHSRPTMEQVYNMFVMPKPPSMETFHVVTLGQLLN 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04404 1035 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Trre10g04404 1035 Pfam Leucine rich repeat 524 583 IPR001611 GO:0005515
Trre10g04404 1035 FunFam Nuclear pore complex protein NUP107 47 206 - -
Trre10g04404 1035 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Trre10g04404 1035 FunFam MDIS1-interacting receptor like kinase 2 823 1020 - -
Trre10g04404 1035 Gene3D Phosphorylase Kinase; domain 1 703 822 - -
Trre10g04404 1035 ProSitePatterns Protein kinases ATP-binding region signature. 750 773 IPR017441 GO:0005524
Trre10g04404 1035 SUPERFAMILY L domain-like 72 416 - -
Trre10g04404 1035 Pfam Leucine rich repeat N-terminal domain 49 86 IPR013210 -
Trre10g04404 1035 ProSiteProfiles Protein kinase domain profile. 744 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04404 1035 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 354 669 - -
Trre10g04404 1035 Gene3D Transferase(Phosphotransferase) domain 1 823 1020 - -
Trre10g04404 1035 SUPERFAMILY Protein kinase-like (PK-like) 721 1014 IPR011009 -
Trre10g04404 1035 Gene3D Ribonuclease Inhibitor 378 667 IPR032675 -
Trre10g04404 1035 ProSitePatterns Tyrosine protein kinases specific active-site signature. 868 880 IPR008266 GO:0004672|GO:0006468
Trre10g04404 1035 Gene3D Ribonuclease Inhibitor 47 208 IPR032675 -
Trre10g04404 1035 Gene3D Ribonuclease Inhibitor 209 277 IPR032675 -
Trre10g04404 1035 SUPERFAMILY L domain-like 381 657 - -
Trre10g04404 1035 Gene3D Ribonuclease Inhibitor 278 377 IPR032675 -
Trre10g04404 1035 FunFam Leucine-rich repeat receptor protein kinase MSP1 707 822 - -
Trre10g04404 1035 Pfam Protein kinase domain 746 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04404 1035 FunFam Leucine-rich repeat receptor protein kinase EMS1 251 350 - -
Trre10g04404 1035 SMART LRR_typ_2 306 329 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 354 378 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 570 593 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 498 522 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 546 569 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 594 617 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 258 282 IPR003591 -
Trre10g04404 1035 SMART LRR_typ_2 115 139 IPR003591 -
Trre10g04404 1035 PANTHER LEUCINE RICH REPEAT KINASE 2 303 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04404 Trre-Chr10 53288907 53293591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04404 21 916 Receptor kinase-like Gene Family AT4G08850 44.551 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre10g04404 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04404 - - gmx:100800924 1291.17