Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04398 ATGTTACTTGGACAATCATCATCCTCAATTTCTTCAAATATATCCTCGCGATGGATATACCATGTTTTCTTGAGTTTTAGAGGAGAAGATACGCGTCTTGATTTCACAGATTACATATATGCAGCTTTGGTTAGAAAGGGAATCATAACTTTTAGGGATGACAAACAACTCGAGAAAGGAGATGCAATTGCGTTTGAACTCTTCAAAGCAATTGAACGGTCACTTTCTGCTGTTATTGTTCTGTCCAAAACCTATGCTTCTTCCACTTGGTGTTTGGATGAGCTACAAAAAATACTTGAATTGAAAAAAGTTTTGGGAATTGAGGTTTTTCCGGTGTTCTATGGTGTTAGTCCTGATGATGTTCTTAATCAGAGAGATAGTTTTGCTGCGGCTTTTGAAAAACATGAAAGGAGATATGATGGAGAGAGGGTACAAAGATGGAGGGATTCTTTAGAAGAAGTTGCTGGCATACCTGGCTGGGAGTCCAAGAATCGTGATGAAACAGAGCTGATTGATAATATTGTTGAATCAGTATGGAAAAAACTACGTCCCAAAATGCCTTCTTATGAAGATGGGTTAGTTGGAATTGACTCAAGAGTTGAAAAAATGGCTAAAGTTATAAGGGTGGAATCAATGGACACTAACTTTGTCGGAATATGGGGTATGGGCGGCATAGGAAAGACAACTCTAGCTAGAGTCGTCTTCAAGAAAATCAAACATCAGTTTGATATAAGTTGCTTCCTTGAAAATGTCCGAGAGGTTTCCGAAGAAATAGACGGTTTGCTTTCTATTCAAAGAAAGCTTCTTTCTCATTTAAACATAAAAGGGTTAGAAATTCGAAACTTGGACGAAGGAAAGAACACAATAAGAAACCTTTTGTCCAACAAGAAAATTCTCCTTGTTGTTGATGATGTTGATGACATAAACCAATTAGAGAGTTTGGCTCATAGAGATTGGTTTGGTCATGGAAGCAAGGTTATAATAACAACTAGAGACATACATGTATTAAAATCACATGGTATAGTACAAAGTTATAAAGTTGATTTCTTGAATTTTGATGAATCACTTCAACTATTGTGTCGAAAGGCCTTTAAAAGAGATCAACCTCATGAAGAATATTTGGATTTGTCAAAAGTTGTTGTTAAATATGCTGGTGGTCTTCCTTTAGCACTTAAGCTTTTGGGTTCATTTCTTTGTGGAAGAAGTGAATCTCAATGGAAAGAAGTTGTGGATATGATACAAGAAGTACCACCAAATGATATTGTGAAGAAATCACTTAGAATAAGCTACAACGGTTTATCAATGCGTTACAAAACATTGTTTCTTGACATTGCTTGTCTTTTCAAAGGGTGGGTTAAAGAGATTTTGACGCAAATATTACAAATATGTGATCGTTATCCGCCAATTGGAATTGAACTTCTGATTGAAAAATCATTGGCAAGTTATGACGGATTTCATTTGGGAATGCATGACTTACTTCAAGAAACGGGAAGAGAAATTGTTGTCGATGAATGTCCTATAGATCCTCTCAAACGCACTAGGCTATGGTCTCTAAAGGACATCGATGAAGTACTAAACTCTAATAATAAAAATAAGGTATCTGAATCGATTCAGGGTATAATATTCGATACTGTGCCAAAGTCATACGAAGCAAAGTGGGATCCTGAAGCCTTGTCAATGATGTGTAATCTTAAATTTCTTATCATAAATCAAAATGTACAGCTTCCTCGCGGCCTCAAATGTCTTTGCAGATCATTGAAATTTCTCCAGTGGTTGGAGTATCCTTTGGAAGCTTTACCGGATGGTGTCGAGCTAGATGAAATTATAGAGTTGAGGATGCATCATAGTAAAATCAAATATATTTGGAGTGAAACTCAATTTTTTGCAAAGCTGAAGTTCATTGATCTGAGCTTTTCCAAAAATCTAATTCAAACACCTATAGTTTCCGGAGCTCCATGTCTTGAACGCATGCTTCTTATCGGTTGTACAAACCTCGTTGAAGTTCATCATTCTGTTGGACAACACAAGAAGCTTGTTGTGTTATACTTGAAAGACTGCAAAAATCTTAAAACCTTCCCAAAAAAATTGGAAATGGATTCTCTAGAGGAGTTGAATCTTTCAGGCTGCTCAAAAGTTAAAAAGCTCCCCGAGTTCAGAAAGAACATGAAATATTTATCACTTCTTAATTTGGAGAATTGCATAAATCTTATTTGCCTACCAAACTCCATTCATAATTTGAAGTCACTCAAAAAACTCTACATTTCTGGTTGCACAAAATTTTCCAAACTTCCTGAAAGTATGAATGAAAATGAGTGTTTGGAAGAGCTTGATCTTAGAGGGACTAATGTAAGAGATATTACTTTATCCAAAATTCATCTAGAAAATCTTAAAGAGTTTTCTTGTGGTGGAAGAAAAGAACTAGCATCCAATTCAAGGAACTTAATTTTAAGGATATCAAAGTTTAGGAGAAAGCAAGATCCAAAGAAGTTTATAATATTGCCTCCTCTTTCCAGCTTATTAGCTTTGACATCATTGAATTTAAGTTACTGTAACCTTAATGATGAATCAATTCAGAATATTGGTTCCTTAAAGTTTTTGCAGGAATTGGATCTAAGTGGGAATAATTTTGTTAATCCACCTGCTCACTGCATTAGTAATCTTCATATGCTGCAGAATTTGTCCTTCACTAATTGTCCAAGCCTTGAGTCTTTGCCTCAGCTTCCGCAAAATGTACAATCCTTATACACCACTAATTGTACTCAACTTAATCCCTTAAATTTGGATCCACAAAGACTATGGAAGATCTTTGAGTCACATTTACGTTTGGATCAGATGGAATATTGGCCAGAACTTTGGTACATCATACCAGGGAATGAAATTCCATCATGGTTTGACAATCAAGAATGTGATTTCATTAATCCATCAGAACATCCATATAACAAGTTGAATTGTGATTCAATTGCATCAATAATAGTGAATGTACCTGATTACTATCAATCAAGTGAATGGTGGGGAATTGCAGTGTGTTTAGTTTTAGAACCATTATCTAATTCATCCTCATCTCATATGAGACCAAATTCCACAACTAGTATTGGACAAGAATGCATTTATTATTGGGTTTGTAAATCTCCTAATCAAGAACCTGATGAGAATTTTCCCATAGCATCAAAATATGGACACTTAGTTTATGAATTCAATGATCCTAACATCCATGTTTTGTTTCTGACTGGTGAACATATATATATTCAACATTATCTAAGTGGAGGGAAAGATCAACTTCAGTTGATATTTTATGTTGAGAACCAATCTAAATATTGGAAGGCAACAATAACGAATTGCGGGTGTCGTGTGATATGTAAGGAAGATATTGAAGATTACTCAAATGGTCTCAACATACCAAGATTGACAGAGATGAATCAAGAACTGCAGTAA 3432 0.3529 MLLGQSSSSISSNISSRWIYHVFLSFRGEDTRLDFTDYIYAALVRKGIITFRDDKQLEKGDAIAFELFKAIERSLSAVIVLSKTYASSTWCLDELQKILELKKVLGIEVFPVFYGVSPDDVLNQRDSFAAAFEKHERRYDGERVQRWRDSLEEVAGIPGWESKNRDETELIDNIVESVWKKLRPKMPSYEDGLVGIDSRVEKMAKVIRVESMDTNFVGIWGMGGIGKTTLARVVFKKIKHQFDISCFLENVREVSEEIDGLLSIQRKLLSHLNIKGLEIRNLDEGKNTIRNLLSNKKILLVVDDVDDINQLESLAHRDWFGHGSKVIITTRDIHVLKSHGIVQSYKVDFLNFDESLQLLCRKAFKRDQPHEEYLDLSKVVVKYAGGLPLALKLLGSFLCGRSESQWKEVVDMIQEVPPNDIVKKSLRISYNGLSMRYKTLFLDIACLFKGWVKEILTQILQICDRYPPIGIELLIEKSLASYDGFHLGMHDLLQETGREIVVDECPIDPLKRTRLWSLKDIDEVLNSNNKNKVSESIQGIIFDTVPKSYEAKWDPEALSMMCNLKFLIINQNVQLPRGLKCLCRSLKFLQWLEYPLEALPDGVELDEIIELRMHHSKIKYIWSETQFFAKLKFIDLSFSKNLIQTPIVSGAPCLERMLLIGCTNLVEVHHSVGQHKKLVVLYLKDCKNLKTFPKKLEMDSLEELNLSGCSKVKKLPEFRKNMKYLSLLNLENCINLICLPNSIHNLKSLKKLYISGCTKFSKLPESMNENECLEELDLRGTNVRDITLSKIHLENLKEFSCGGRKELASNSRNLILRISKFRRKQDPKKFIILPPLSSLLALTSLNLSYCNLNDESIQNIGSLKFLQELDLSGNNFVNPPAHCISNLHMLQNLSFTNCPSLESLPQLPQNVQSLYTTNCTQLNPLNLDPQRLWKIFESHLRLDQMEYWPELWYIIPGNEIPSWFDNQECDFINPSEHPYNKLNCDSIASIIVNVPDYYQSSEWWGIAVCLVLEPLSNSSSSHMRPNSTTSIGQECIYYWVCKSPNQEPDENFPIASKYGHLVYEFNDPNIHVLFLTGEHIYIQHYLSGGKDQLQLIFYVENQSKYWKATITNCGCRVICKEDIEDYSNGLNIPRLTEMNQELQ 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04398 1143 PRINTS Disease resistance protein signature 384 398 - -
Trre10g04398 1143 PRINTS Disease resistance protein signature 696 712 - -
Trre10g04398 1143 PRINTS Disease resistance protein signature 292 306 - -
Trre10g04398 1143 PRINTS Disease resistance protein signature 216 231 - -
Trre10g04398 1143 Gene3D - 349 434 IPR042197 -
Trre10g04398 1143 Gene3D - 13 183 IPR035897 -
Trre10g04398 1143 SUPERFAMILY L domain-like 489 929 - -
Trre10g04398 1143 SMART till_3 19 157 IPR000157 GO:0007165
Trre10g04398 1143 ProSiteProfiles TIR domain profile. 18 186 IPR000157 GO:0007165
Trre10g04398 1143 Gene3D - 184 344 IPR027417 -
Trre10g04398 1143 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Trre10g04398 1143 Gene3D Ribonuclease Inhibitor 816 951 IPR032675 -
Trre10g04398 1143 Pfam TIR domain 20 194 IPR000157 GO:0007165
Trre10g04398 1143 Gene3D Ribonuclease Inhibitor 698 772 IPR032675 -
Trre10g04398 1143 Gene3D Ribonuclease Inhibitor 548 697 IPR032675 -
Trre10g04398 1143 Pfam NB-ARC domain 200 431 IPR002182 GO:0043531
Trre10g04398 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Trre10g04398 1143 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 160 IPR035897 -
Trre10g04398 1143 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 717 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04398 Trre-Chr10 53226966 53231452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04398 14 799 WRKY Transcription Factor Family AT4G12020 31.114 1.57e-96 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04398 - - gmx:100799850 1496.49