Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04397 ATGTTACAAGGAGAATCATCTTCCTCAAATTCTTCCTATACAACAACATACCATGTATTCTTAAGTTATGGAAGAGAAGGAACACACGTACAATTCACTCATCACTTACGTGCTTCTTTGAAGCGAAAAGGAATCATAGCTTTCTCATCATATGATGACAAAGATCATATGATTGAGAATTCCCTAGCTGCTATTGTAGTTTTCTCCAAGAGCTATGCTTCTTCTACTTTGTGTTTGGATGAACTAAAAAAGATTGTTGAATCAAAGAGAGAGTTTGGATTACATGTTTTTTCTGTCTTCTATGATGTTACTCCTTCTGATGTTCGTTACCAGAAAAACAGTTTTGGTGAAGCTTTTGAGCAACATACCATAAGCTCTGAAGAAGACAAATTGAAGATGCATAAATGGAGACATTGCTTACATCAAGTTGCGGATTTATCTGGCTTTGAGTCTAAAAATAGGCATGAAAATGATCTCATTGAAGACATTATTAAATCGGTATGGAGAAAGCTACATCTTAAAATACCATACTCCAATGATAGACTAGTTGGAATCGATTATAGAGCTAAAAAATTGGAATCAATTTTAAGAATGCAAGTGAAGGAGAAGGTCCATTTTGTAGGAATATGGGGCATGGGTGGTATCGGAAAGACAACTCTAGCTAGAGACATATTCAAGAAATTACGTAATGAATTCGAGATAAGTTGTTTCCTTGAAAATGTTACCGAGATTTTTGGTGGAAGAGATGGTAAATTTAATTTACAAAAAAAACTTCTTTCTCATATGAATATACATTTGAAAATCGAAGATCTGGATGAACGAAATAATAAAATACGAGATGTCTTTCGCAACAATAAAGTTCTTCTCGTCTTTGATGGTGTTGATGATAAATTACAACTAGAGGACTATGTTACAAAAAAAGAGTGGTTTGGACTTGGGAGCAAAATCATAATAACTACAAGAGACAAGCAAATACTAAGATCATGTGAATTAGATGAAGTTTATAAAATGGAATTACTAAATTTGGACGAGTCACTTCAACTCTTCAATAAGAATGCATTTATATGGGGAAAAAAAAGTGAACATCATTTGGAGTTGTCAAAAATTGTTGTCCAATATAGTGGAGGCCTTCCCCTAGCCCTATTGAGGTTGGCCTCTATTTTTTGTGGTAGGGAAGAATCTCAATGGAAAGAGGTTTTGAACACAACACAAGAATTGCTAGAGATTGATGATTTTCATGTGATGAAGACACTTAGAATAAGCTATGATGGGTTGCCAAGAGATTATAAGACATTGTTTCTTGATATTGCATGTTTTTTTAATGGGTGGGTAAAAGAGGATGTGATACAAATTCTAAGAATTTGTGACCGTTATCCAGCAGATGGAATTGAATATCTAATTGATAAATCATTAGCAAGTTATGATGGATTACATTTGGGTATGCATGGTTTGCTTCAAGAAATGGGAAGGAAAATTGTTATTGAAGAATGTATTATAGATGCTGGCAAACGCAGTAGATTGTGGTCTCTTCAGGACATTGACCAAGTAATGAAAAATAATAAAGCAATTGAATTGATTCAGGCACAGGGTATAGTATTGAAGTCATCCACTCAGCCATACAGAGCTAATTGGGATCTTGAAGCTTTCTCAAAAATGAGTTATCTTCAATTTCTTATAATTAATTTTCATAATATGCATCTTCCATTTGGCCTAAAATGTCTTTGTAGTTCATTGAAATTTCTTGAGTGGACAGAGTATCCTTTGGAATCTTTGCCGCTTAGTGTGCAGCTAAATAAACTTGTCCACATGAAAATGCATCACAGCAAAATACTAAAGATTTGGAGAGGAAATCATAATTTTGCAGAGTTGAGATTCATTGATCTGAGCCATTCAAAATATCTAACTCAAACTCCTATTGTTTCTGGGGCTCCAAGTCTTGAAAGTTTGATTCTTGAAGGGTGCACAAGCCTTGTTAAGGTTCACAAATCAGTTGGAAAACACAAGAACCTTGTCATATTGAACATGAAAGATTGCAAAAAACTTCAAACACTTCCAAGAAAATTGAAAATGGATTCTTTGGAGGAGTTGATTCTTTCAGGCTGCACAAAAATTAAAAAGCTTCCTAAGTTTGAAAAGAATATGAAATGCTTATCAAGGCTTAGTTTGGAGGATTGCAAAAATCTTCTTTATCTACCAACTTTTATTTGCAATATGAAATCTCTTAAAATGATTAATATTTCTGGCTGCTCAAAAATTTCTAAGCTGCTAGACAATATGAATGAAAATGAGTCATTAAATGAACTTTATGTGAATGGAACTTCCATAAGAGAAATCACTTCATCAAAAGTTTGTTTGGAGAATCTTAAGGAACTCTCATTTGGTGGAAGGAAAGAACAAGTATCCAACTCAAGGAACATATTTCAAAGGATCTCTAAGTTTAGGAAGCAACCAATTCCAATGGAGTTGATCTTGCCTCCTCTTTCGCGTTTATCCGGCTTGAAGTTCTTAAATTTGAGTTATTGTTACCTTAATGATGAATCAATTCCGGATAACCTTGGTTCCATATCTTTTTTGCAGGTCTTAGATCTAAGTGGGAACAATTTTGTTAATCCACCTTCTAACTGCATTTGTAATCTTTTCATGCTGCATAGTTTGATTATAACTGATTGCACAAGACTTGAGTCTTTGCCTATACTTCCATCAAATGTACAATGCTTATTTACATATAACTGCCCTCAATTGAAAACCTTAAATCTTGATGACCACATGCTATGGCAGACCTTTGAGTCACATATGAATCAGAAAGAAGATAGGCCAAATTTTTGTCTAACCAATCCAGGGAGAGAAATTCCAACATGGTTTAACAATCAAAAAGTGGATTTTATCAAACCAACACATCATCCATACAACAAGTTGGTTTGTGATTCAATTGCATCAATAAAAGTTGAAGTATCTGACCAATGTCAATCAAGTAAATGGTGGGGAATTGCAATATGTCTAGCATTAGAACCTTCAACTATGCAACAATCTTCTCCTCCCTCACATGTAATAGAAGCTTCAACATGCAATTATTATTGGAGCTGTAAAGATCCTAATTGGGAACCTTATTTGGATTTTCCCATAGGACTTAAATATGGCTATCAATGTGGTGACTACCCTTACACTCATATTATATTCTTGAGTGGTGATCATACTTATATTCAGCATTATTTGAGTGGAGAGAAAAGCCAACTTGAGTTGATGTTTTATGTTGAGAATTTTTCTAAGCTAGGGAGGCCAATTACAATAAACAAGTGTGGTTGTCGTGTGATATGTAAGGAAGATGTTGAAAATTGGTGCAATAATCTCCATCACATGTAA 3360 0.342 MLQGESSSSNSSYTTTYHVFLSYGREGTHVQFTHHLRASLKRKGIIAFSSYDDKDHMIENSLAAIVVFSKSYASSTLCLDELKKIVESKREFGLHVFSVFYDVTPSDVRYQKNSFGEAFEQHTISSEEDKLKMHKWRHCLHQVADLSGFESKNRHENDLIEDIIKSVWRKLHLKIPYSNDRLVGIDYRAKKLESILRMQVKEKVHFVGIWGMGGIGKTTLARDIFKKLRNEFEISCFLENVTEIFGGRDGKFNLQKKLLSHMNIHLKIEDLDERNNKIRDVFRNNKVLLVFDGVDDKLQLEDYVTKKEWFGLGSKIIITTRDKQILRSCELDEVYKMELLNLDESLQLFNKNAFIWGKKSEHHLELSKIVVQYSGGLPLALLRLASIFCGREESQWKEVLNTTQELLEIDDFHVMKTLRISYDGLPRDYKTLFLDIACFFNGWVKEDVIQILRICDRYPADGIEYLIDKSLASYDGLHLGMHGLLQEMGRKIVIEECIIDAGKRSRLWSLQDIDQVMKNNKAIELIQAQGIVLKSSTQPYRANWDLEAFSKMSYLQFLIINFHNMHLPFGLKCLCSSLKFLEWTEYPLESLPLSVQLNKLVHMKMHHSKILKIWRGNHNFAELRFIDLSHSKYLTQTPIVSGAPSLESLILEGCTSLVKVHKSVGKHKNLVILNMKDCKKLQTLPRKLKMDSLEELILSGCTKIKKLPKFEKNMKCLSRLSLEDCKNLLYLPTFICNMKSLKMINISGCSKISKLLDNMNENESLNELYVNGTSIREITSSKVCLENLKELSFGGRKEQVSNSRNIFQRISKFRKQPIPMELILPPLSRLSGLKFLNLSYCYLNDESIPDNLGSISFLQVLDLSGNNFVNPPSNCICNLFMLHSLIITDCTRLESLPILPSNVQCLFTYNCPQLKTLNLDDHMLWQTFESHMNQKEDRPNFCLTNPGREIPTWFNNQKVDFIKPTHHPYNKLVCDSIASIKVEVSDQCQSSKWWGIAICLALEPSTMQQSSPPSHVIEASTCNYYWSCKDPNWEPYLDFPIGLKYGYQCGDYPYTHIIFLSGDHTYIQHYLSGEKSQLELMFYVENFSKLGRPITINKCGCRVICKEDVENWCNNLHHM 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04397 1119 Gene3D - 171 336 IPR027417 -
Trre10g04397 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
Trre10g04397 1119 SMART till_3 16 146 IPR000157 GO:0007165
Trre10g04397 1119 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 149 IPR035897 -
Trre10g04397 1119 Gene3D - 14 170 IPR035897 -
Trre10g04397 1119 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 709 IPR044974 GO:0006952
Trre10g04397 1119 Gene3D Ribonuclease Inhibitor 691 762 IPR032675 -
Trre10g04397 1119 Gene3D Ribonuclease Inhibitor 545 690 IPR032675 -
Trre10g04397 1119 Pfam NB-ARC domain 201 407 IPR002182 GO:0043531
Trre10g04397 1119 Pfam TIR domain 17 180 IPR000157 GO:0007165
Trre10g04397 1119 Gene3D Ribonuclease Inhibitor 763 943 IPR032675 -
Trre10g04397 1119 SUPERFAMILY L domain-like 481 926 - -
Trre10g04397 1119 Gene3D - 340 426 IPR042197 -
Trre10g04397 1119 ProSiteProfiles TIR domain profile. 15 171 IPR000157 GO:0007165
Trre10g04397 1119 PRINTS Disease resistance protein signature 281 295 - -
Trre10g04397 1119 PRINTS Disease resistance protein signature 374 388 - -
Trre10g04397 1119 PRINTS Disease resistance protein signature 736 752 - -
Trre10g04397 1119 PRINTS Disease resistance protein signature 206 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04397 Trre-Chr10 53220384 53225856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04397 12 793 WRKY Transcription Factor Family AT4G12020 30.012 4.63e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04397 - - gmx:100798387 1220.68