Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04386 ATGCAACATCAAGTAGCATCAGAAGTTCAACATACCCAGTTGAAGAAAAAGAACCAAGAAACACAGATGTGTAGGAAAATCAAACTCAGTATATCTGATCATAACAACAACCTCAAAAACACCACAACCGTTGATGATGATGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTGCTATGGTTGATAATGGCATTTTCCGTTCTGGTTTTCCAGAACCTTCCAACTTCTCTTTCCTTCAAACCCTTGGCCTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCTGAAGCTAACATGGAGTTTCTCAAGTCAAATGGGATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCATTTGTAAACATTCCAGAAGACACAATCCGGGAAGCGCTAAAAGTTCTTCTTGATGTAAGGAACCATCCAGTTATAATTCACTGTAAGCGAGGAAAGCATCGAACAGGTTGTTTAGTCGGATGCTATAGAAAACTACAAAAATGGTGCTTGTCATCTGTTTTCGATGAGTACCAGCGCTTTGCAGCTGCAAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCTTGAAGCATTTGCCTATACCTTTTTCATATTTGAAAAGGTAA 666 0.3949 MQHQVASEVQHTQLKKKNQETQMCRKIKLSISDHNNNLKNTTTVDDDDVCDKIDGEDLFIPPLNFAMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSYLKR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04386 221 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 218 IPR020422 GO:0006470|GO:0008138
Trre10g04386 221 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 206 IPR029021 -
Trre10g04386 221 PANTHER TYROSINE-PROTEIN PHOSPHATASE 37 210 - -
Trre10g04386 221 CDD PFA-DSP_Siw14 58 205 - -
Trre10g04386 221 Pfam Tyrosine phosphatase family 60 211 IPR004861 -
Trre10g04386 221 Gene3D Protein tyrosine phosphatase superfamily 58 208 IPR029021 -
Trre10g04386 221 PRINTS Plant and fungal dual specificity phosphatase signature 59 76 IPR020428 GO:0016791
Trre10g04386 221 PRINTS Plant and fungal dual specificity phosphatase signature 115 129 IPR020428 GO:0016791
Trre10g04386 221 PRINTS Plant and fungal dual specificity phosphatase signature 132 146 IPR020428 GO:0016791
Trre10g04386 221 PRINTS Plant and fungal dual specificity phosphatase signature 96 109 IPR020428 GO:0016791
Trre10g04386 221 ProSitePatterns Tyrosine specific protein phosphatases active site. 154 164 IPR016130 GO:0016311|GO:0016791
Trre10g04386 221 FunFam probable tyrosine-protein phosphatase At1g05000 58 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04386 Trre-Chr10 53148485 53151471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04386 42 221 Protein tyrosine phosphatase (PTP) family AT4G03960 72.222 1.82e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04386 K18045 - gmx:100814279 361.688