Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04385 ATGAGGCCAACAGATTTGCTTAGGGTTCTGAACAAGCAGTTTCTTGGAATCGCCAGTGACACTGCAAATACTGTTGCTAAGAAGCTGACTTCGTCGGCTCCTGTTGTATCGCGCAAACCAGCGTTTATAGATGCATTCCTTTACAAAATGAAAAAGAATCCAGAACTTCTGAAGAACAAAACCATTTGGTCACGAAGATCCACTATCTTGCCGGAATTTGTTGATTCCCAGGTCAAGATTTACAACGGGAAAACCACCATTCGCTGTAAGATCACTGAAGGAAAAGTGGGTCATAAGTTTGGCGAGTTCGCTCTCACCAGGAAACGTAAATCCAGAGACCAACCTAATGCAAAAGTTAAACAACTCAAGAAAAAGAAGTGA 381 0.4226 MRPTDLLRVLNKQFLGIASDTANTVAKKLTSSAPVVSRKPAFIDAFLYKMKKNPELLKNKTIWSRRSTILPEFVDSQVKIYNGKTTIRCKITEGKVGHKFGEFALTRKRKSRDQPNAKVKQLKKKK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04385 126 Hamap 30S ribosomal protein S19 [rpsS]. 6 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 Gene3D 30s Ribosomal Protein S19; Chain A 35 121 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 PRINTS Ribosomal protein S19 family signature 62 81 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 PRINTS Ribosomal protein S19 family signature 94 109 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 PRINTS Ribosomal protein S19 family signature 82 94 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 ProSitePatterns Ribosomal protein S19 signature. 82 106 IPR020934 GO:0003723
Trre10g04385 126 MobiDBLite consensus disorder prediction 107 126 - -
Trre10g04385 126 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 35 121 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 SUPERFAMILY Ribosomal protein S19 38 111 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre10g04385 126 FunFam Ribosomal protein S19, mitochondrial 34 121 - -
Trre10g04385 126 Pfam Ribosomal protein S19 46 110 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04385 Trre-Chr10 53124836 53125216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04385 54 116 Cytoplasmic Ribosomal Protein Gene Family AT5G09490 31.746 3.44e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04385 K02965 - gmx:100782150 207.994