Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04383 ATGCCAGAAAATAGGCAGGTTTTGAAGAATGCTGCTTCTAATCCATCTGGTGATAACATTGAAGAAGCAATTCGGCGTTTGAAAATCAATAATAATCGGGACAGAGATGCTGCGGCTCAATCTATGCCTTATCCGGATCGACCTGGTGAACCGGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAACGTTTCACTTGTTACTCCATATGGTGAAGAACTTCCTGAGAGAGTCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCTAAGGACAGGCGAGGTGCTGCGCCCGTAGTATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGTTCTTGTAAGTTTGGAGTTGCATGCAAGTTCCATCATCCACAACAGCAGGCTTCCTTTGGAACTTATCCGGTGGCTGCGTCCCCTCCATCAACAACTGTTACTTCATCCGGTTTTCCATATGCTGGCGGGTTTCCTGCATGGTCAGTGCCGAGAATGTCGTATTTATCTGGACAGGCCATTCAATCTTATGTTCCTCCTTTTATGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTTCTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGAATCCGGCGGCGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCAGACTGTAAATACTTTATGAGCACCGGAACATGCAAGTATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCGGTTAATCCACTTGGCCTTCCTATGAGACCTGGTAATGCTATATGCTCTTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCACTTGTAGCAGCCATCCCTCAAAACTACGGCTTGCCTTCACCTACTCTATCGGTATTCGACCCATCTCTCCTTACCAGTCCAAGAAGGCTTTCGACCGTCCAACCAACCGAGACATCTCCATCAAAACAATCAACTGACAAACTTCAACAATCTGACACAAAAGCTGCCACTGAAGAAGATTCATCTAAACAAGCTGACGACACTACATCAAATTCTCGCACACCTTCGTCCGAGTCTTTGCACGAATGA 1284 0.4447 MPENRQVLKNAASNPSGDNIEEAIRRLKINNNRDRDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVTPYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGTYPVAASPPSTTVTSSGFPYAGGFPAWSVPRMSYLSGQAIQSYVPPFMPSSQGIMPALSWSNYMGSISPAMPSGFIGSNLVYDYMNPNPAAGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSVNPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPLVAAIPQNYGLPSPTLSVFDPSLLTSPRRLSTVQPTETSPSKQSTDKLQQSDTKAATEEDSSKQADDTTSNSRTPSSESLHE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04383 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Trre10g04383 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Trre10g04383 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 345 IPR000571 GO:0046872
Trre10g04383 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Trre10g04383 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Trre10g04383 427 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Trre10g04383 427 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Trre10g04383 427 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Trre10g04383 427 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Trre10g04383 427 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Trre10g04383 427 Gene3D - 46 119 - -
Trre10g04383 427 Gene3D - 274 353 - -
Trre10g04383 427 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g04383 427 MobiDBLite consensus disorder prediction 372 396 - -
Trre10g04383 427 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Trre10g04383 427 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Trre10g04383 427 SUPERFAMILY CCCH zinc finger 320 345 IPR036855 GO:0046872
Trre10g04383 427 PANTHER PROTEIN PHOSPHATASE RELATED 22 384 - -
Trre10g04383 427 Gene3D - 120 168 - -
Trre10g04383 427 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Trre10g04383 427 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Trre10g04383 427 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Trre10g04383 427 MobiDBLite consensus disorder prediction 397 411 - -
Trre10g04383 427 MobiDBLite consensus disorder prediction 372 427 - -
Trre10g04383 427 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Trre10g04383 427 MobiDBLite consensus disorder prediction 412 427 - -
Trre10g04383 427 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Trre10g04383 427 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Trre10g04383 427 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04383 Trre-Chr10 53065319 53069101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04383 1 412 C3H Transcription Factor Family AT1G04990 44.258 4.24e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre10g04383 zf-CCCH 1.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04383 - - vra:106765262 682.174