Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04381 ATGGTTCGAGTGAGGACTACTCCACGACTGAGGTCACCATTAGTTTTGCCGAAACTAACAGTACGAAAACCAATTTCAGCTCAGCAAAACAACATCTGCACTGGACAAAGTCCAGCGAAGGAAATCCACTATCGCGGTGTTCGAAAGCGACCACGAGGCCGATACGCTGCAGAAATCCGAGACCCGTTTAAAAGAAAACGTCTATGGTTAGGAACTTATAAAACTGTTGAAGAAGCTGCCCGTGCATATGACCAGAAAGCGATTGTATTCCGTGGAGAAATGGCTAAAACTAATTTCCCCATCTCTGAATACATATTTGATGATGGTCAGATTCCTCCTGCTGCTCCTCCTGTTCAAATTCCTCCTGCTGCTCCTCCTGTTCAAATTCCTCAATCTACTGCTCCTTTGGCGAACGATTTTAGAAACTGCAGACTTAATGTTTTGCATATTGCTAAGTCCATGAGAAAGAAGAAAAAGAAATACAAATTTTTTTTTGGTAACGGCATGGCTCGCCAAAGGTTAATCAGAGAACCGAGACTGGTGCTCCGAGAACCTGTTCCTCCTTCGCTGCCGAACGAAAATCAAATTCCGGCTGAGAATGAGATTCTAACTCCGCCGAACGAAATTCCTGTTGAGGATGCAGAAATCCGCTACCGCGGCGTTCGGAAGCGGCCATGGGGAAGATATGCAGCGGAGATCAGAGATCCCTCCAAGAAAGCGCGTGTCTGGTTGGGAACATTTAACACCGCTTTAGAAGCGGCCAGAGCTTACGACGAAAAAGCGATTCTCTTCCGCGGTGCCAAAGCAAAGACGAATTTCCCTATTACAGAGCATATCCTGGCTGGTGGTGATGAGATTGCTGTTGCTGCTGCTCCTACCCGTGCTGCTGCTCATAATAATAATAATAAAATTGAGCTTTTGAATTTTGGGCCTGTTCCGGTGAACAGGCCCACTTCGAGTGGAATGAGCAGTACGGTTGAGTCATTCAGCGGCCCTAGAACAATTGTTGTTGGCTCTTCGTCAACAACGGCTGTTTCTAGGGTTCCTGTTGCTGCTGAGGATTTTCACAGTGATTGTGATTCGTCTTCATCTGTTGTTGATGATGATGAAGAAGATTGTGTTGTTGTTGCTTCTTCATCTTCATCGGTCAAGAAGCCACTGGCGATCGATCTCAATTTGCCTGCTCCGATGAATTCTGATGCGGAGGATGAAGAGATCCGTGCTACTGCCTTGCATCTCTGA 1242 0.4638 MVRVRTTPRLRSPLVLPKLTVRKPISAQQNNICTGQSPAKEIHYRGVRKRPRGRYAAEIRDPFKRKRLWLGTYKTVEEAARAYDQKAIVFRGEMAKTNFPISEYIFDDGQIPPAAPPVQIPPAAPPVQIPQSTAPLANDFRNCRLNVLHIAKSMRKKKKKYKFFFGNGMARQRLIREPRLVLREPVPPSLPNENQIPAENEILTPPNEIPVEDAEIRYRGVRKRPWGRYAAEIRDPSKKARVWLGTFNTALEAARAYDEKAILFRGAKAKTNFPITEHILAGGDEIAVAAAPTRAAAHNNNNKIELLNFGPVPVNRPTSSGMSSTVESFSGPRTIVVGSSSTTAVSRVPVAAEDFHSDCDSSSSVVDDDEEDCVVVASSSSSVKKPLAIDLNLPAPMNSDAEDEEIRATALHL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04381 413 Pfam AP2 domain 217 260 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 Pfam AP2 domain 43 88 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 186 377 - -
Trre10g04381 413 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Trre10g04381 413 CDD AP2 217 276 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 FunFam Ethylene-responsive transcription factor 2 217 276 - -
Trre10g04381 413 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Trre10g04381 413 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Trre10g04381 413 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Trre10g04381 413 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Trre10g04381 413 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Trre10g04381 413 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04381 Trre-Chr10 53046923 53051168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04381 215 349 AP2-EREBP Transcription Factor Family AT1G50640 52.174 1.07e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g04381 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04381 K09286 - tpra:123904184 172.17