Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04380 ATGGAAAATTCAGACCACGACGACGAACCGGAGAAGAAGAGACTTCATCTTCTCACACCAGTTTCTTCCCGCGTTTCACGAAATTCAACAAACCATTCTCCTAACAGCAAAACTGCTGATGCAGGCGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGGAGACAGAAATCCAGAAACAGGCTTTACACGAAGTTGAAGATAAAACTAGAGAATTAAAAGAAAGACAAAATGCTTATGATGAGATACTAATCACATTCAACCAACACTGGGATCAGTTAGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGCAAAGATTCTTTGCGAACTTTGGATTACCTTGATAATCCTCAAGGTTCACTTCCTTCATGTCCTCCGGATGATCTATTTCTGTGTAGATTAATCCAGAAAGTTTGTGTTGAAGGAAGCAGTAATAATGAGATAATTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCGGTTATCTACTACGGAGTTGTTAAAACTCATCCAAGATACCGTTGATGATCAGATGGAAAGAATTGAGGATATAGGTCATGTTTTACACGGAGATTTATCTACGGAAGATGCTGTCATCCAAATGTCTAAGATTGATGATATGACAAAAAAGGAGGTAGACAATTTTCATGAAGTGATTGATACTCTCCATGCAAAACACAAAGAATATACTCTTGGTATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGTCATAAAACGCCTTACAGGAGAGCTTGACGAGATCATGGGTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAATGCAGATGCAGTGAATGGAAACTTGTCTCCTGAGAAGCCTGCAGACAGGGCTATGGGTTTGTCTGAGTTGAAGAATTCAATTGAGGAAGCCAAGATAGTGGACGCTGATCGTCTTTCCGAGCTTCAAGATTCACGGGAAAGAAATCAAATCTTGACAAAGCGATTCCAAGAACTCCAGAATGAACTGAATGATGATAAGTATGTACGCTCTTCCCGAATATACTCTTTGGCAAATGATCAACTTCAACATTGGATTGCTGAATTGGATCGATATAAGTCATTGGCGGAGTCTCTGCAGGCTGGAAGGGCTAATATCGTAAAACGGGAGAAGGAACTGAAGCTGAAATTGGAATCTACTGATAATGCAAGGCATATTCTTGACAGTTCTGATTCTGGGACTGATGAGCTCGAGCTTCAGTTACAGAAATGTATTATTGAACGAAATGATCTGGAACTTACATTGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGTTGAGTTTCGTGTGATGGCCTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCGCAATTGAAGCGATGGAAGGATGCAGCTCTTGAAGCTGTATCATTGCGCGAGAAAGCACACTCACTTAGAGCAACATTGAGTGGAAAGACAAGCGATCTCAGGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAGTTAGAATTTGTTTTGGATATGTATGGCTCGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCTCAAGCTGAAATGTTGAAAAATGCTTTTGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGGACAAAGGCTTTCTGCTGCAGAAGCTGACATAGAAGAGTTAAGGTCCCAGCTTAATAAAACGGAAAGAAACAAATTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAGATCTATATCTCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGATGACTTTAATATTAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCTCATTACTGTCTGAAAAGCAAGCCTTAGCAGATCAACTTCAAAAAATTAATTCTTCGATAGAAAATTCAAAGGCAAAGATTGCAAGTAGTGAAAAACAGATTGAATTTATTCTATCAGAAGCTGCGAAATGTACGCAAGATGAAAAACACCTTGCAGTCGCCTTAGAGTTTACCAGGTGGGAATTAGCTGATGCTGAGAAGGAGTTGAGGTTGCTCAAGTCTGTTGCTTCATCCTCAGAGAAAGAATATGACCAAATTCAGAAAGATATCGAAGCTATTGAAAAGGAATTGGATAGTGAAAGGAGTTCAAGGAAGAAGCTCGAGGAAGAACTAATGGAAGTGAACAGCCAAATTGCTGAGCTGAAGGCTGAAACTGGAGAAACCGCAGTACAACAACTTGAAGAAGAAATTAGAGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCACCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGCCCTGCCTGTGGAACAGCATTTGGTCAGAGCGATGTTCGTTTTGTTAAAATATGA 2646 0.4055 MENSDHDDEPEKKRLHLLTPVSSRVSRNSTNHSPNSKTADAGVLQLQNQQLVQETEIQKQALHEVEDKTRELKERQNAYDEILITFNQHWDQLVDDMALLGIQAGRGKDSLRTLDYLDNPQGSLPSCPPDDLFLCRLIQKVCVEGSSNNEIINYVEEALALRRLSTTELLKLIQDTVDDQMERIEDIGHVLHGDLSTEDAVIQMSKIDDMTKKEVDNFHEVIDTLHAKHKEYTLGIQNYIDECLRDQSVIKRLTGELDEIMGELEESRRKLVSLKMQKDAAMGMNSSNADAVNGNLSPEKPADRAMGLSELKNSIEEAKIVDADRLSELQDSRERNQILTKRFQELQNELNDDKYVRSSRIYSLANDQLQHWIAELDRYKSLAESLQAGRANIVKREKELKLKLESTDNARHILDSSDSGTDELELQLQKCIIERNDLELTLEEAKQDTGRKDIKVEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRATLSGKTSDLRSLANKCAEQVLEIKSSKALIEKLQQENQELEFVLDMYGSEDYQKSLPEVRESESKARSQAEMLKNAFDEHGLELRVRAANEAEAACGQRLSAAEADIEELRSQLNKTERNKLEMTEAIKVKEAEAEIYISEIETIGQAYEDMQTQHQHLLQQVAERDDFNIKLVSESVKAKQLHSSLLSEKQALADQLQKINSSIENSKAKIASSEKQIEFILSEAAKCTQDEKHLAVALEFTRWELADAEKELRLLKSVASSSEKEYDQIQKDIEAIEKELDSERSSRKKLEEELMEVNSQIAELKAETGETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04380 881 Coils Coil 514 548 - -
Trre10g04380 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Trre10g04380 881 MobiDBLite consensus disorder prediction 21 40 - -
Trre10g04380 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Trre10g04380 881 PANTHER RING FINGER PROTEIN-RELATED 10 881 IPR013956 GO:0004842|GO:0010390
Trre10g04380 881 Coils Coil 250 277 - -
Trre10g04380 881 CDD RING-HC_Bre1-like 821 877 - -
Trre10g04380 881 Coils Coil 48 68 - -
Trre10g04380 881 Coils Coil 689 723 - -
Trre10g04380 881 Coils Coil 738 819 - -
Trre10g04380 881 SMART ring_2 829 867 IPR001841 -
Trre10g04380 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Trre10g04380 881 SUPERFAMILY Tropomyosin 689 830 - -
Trre10g04380 881 SUPERFAMILY RING/U-box 828 872 - -
Trre10g04380 881 MobiDBLite consensus disorder prediction 1 18 - -
Trre10g04380 881 Coils Coil 329 349 - -
Trre10g04380 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Trre10g04380 881 Coils Coil 598 632 - -
Trre10g04380 881 Coils Coil 428 448 - -
Trre10g04380 881 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04380 Trre-Chr10 53023260 53038114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04380 802 876 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.03e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04380 K10696 - gmx:100796610 1255.35