Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04371 ATGGGAACTCTTTCACTTCACACCAACCTAAACCTCTTCTTTCTCTTCCACCCCCCTTCCACACGCCAAAACCCTAATTTCCCACATCAAAACCCCAATTTCTCACCTTCTCCTACTCCTTCCCTTTCTCTCAAATCTCATATCTTCCACTGCTCAAAATCCACCCACATTACCGCTCTTTCTCCATCAAAACCAATTCGCATCAAAAGCGCAACAAAAATCGAAGCACAACGTGCGTTAATGGATTACCTTCTCTACACTCGAAATTATCCTTTCACAGACGCAGAATTCATCGCAAAAAACTCTCCACATTTCATCGATTCTCTTATCTCCAAGATCAACATTCAAGACGGAGACGTTTTTCGCTCTATCAGTAGGTATCTTATGTATAACCCTATTAACGAATTTGAACCCTTTTTAGAGAGTTTAGGTATTAAACAAAAACAATTGCAATTATTTCTGCCTAAAGGCTTGTTTTTTCTTAGTGATGATAGTGTTTTGGTTGATAATTTTCATGTCTTGTATAGTCACGGGGTTCCGAGGAATAGAATAGGTAAAATTTATAAAGAAGCAAGAGAGGTTTTTCGGTATGGTAGTGGTGTTTTGGCAAAAAAATTCAAAGATTATGAAGATTTAGGTTTGAGTAAATCTTCTTTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGAATTTGTTGTTGTTCTTGATTGGTTGAAAAAAATTGGGATTGAGATTGAATGGATTGTGCGTTGTATGTCTTGTTTAAGAACGTTTAGTTGGAAAAGAATGATTGATACTATAAAGTTTGTTCATCAAGTTGGATATTCTGAGAAACAAATGTATGATTTGTTTAAAGCGGACCCTAGATTGTTGTTGGAAGGTTCAGGGAAGAAGATGGACTTGCTTTTAGGTTGGTTGATTAAGTCTGGTGTTGATGTGAATGTGGTTAGGTCTTGTTTTGTCGAGCATCCCGATATGTTGTCAAGTAAGTGTGTGCAAAATTTGACGACCGTGGTTGTTTTTTTGTATAATATTCGAATGGAACTAGATGATATTGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAATATTCGATAAAAGGTCATACAACGGTTTGTAAGGAGTTAGGAGTTGGAAAAGCTGATTTATGCCGAATCATAAAGGATGATCCCTTAGAACTTATTAGTTTGGCTTCAAAATCGGAACAGATGAAGGCTGGAAGGGAACACTATCGCGACCCACGTAATTATTTGGATAAAACAACTTTCTTACTGAAAATGAACTATATTGAGAATTCTGAGGAGATGGAAGAAGCAATGAAGATGTTTAAAGGGAGAGGTGATCAGTTACAAGAGAGATTTGATTGCCTGGTAGAAGCTGGTTTGGATTATAACACTGTGGTTAGAATGATAAGGCGAGATCCTAGGATTCTAAACCTGAAGAGAACTGTTATTGAAAAGAAGGTTGATTTCATAAAAAATGCTTCAGATTTCCCTATAGAATGTCTTGTGGGATATCCAGATTACTTTTCTCATGATTTGGGCATAATTAGTGCAAGAATTTCAATGTATCAGTGGTTAAAGAAGAGGAATGCAATTACTCCCACTAAATCCTTGTCTACCATAATTTCATATAATGAAAAGCAGTTTGTAAAACACTTTGTGAATATGCATCCTGAAGAATTCTTGGAAGCAACTCAGAAACTTGGGCTAACATATCCTGCCATTTTTCTTGACACGGCCGATGTGTGTGCACTTAGACATCAAAATTTACTGAAGATGAAAAACACTGTGCAACCGCCTTGGAGTTTGCCAATAGGAATTTTGGCTGATGCTGAGAAGGAGTTGAGGTTGCTCAAGTCTGTTGCAAACATTCTGGGAGCATTGTTTAAAGAATTTTTTTGGTTCCTGTAA 1941 0.3694 MGTLSLHTNLNLFFLFHPPSTRQNPNFPHQNPNFSPSPTPSLSLKSHIFHCSKSTHITALSPSKPIRIKSATKIEAQRALMDYLLYTRNYPFTDAEFIAKNSPHFIDSLISKINIQDGDVFRSISRYLMYNPINEFEPFLESLGIKQKQLQLFLPKGLFFLSDDSVLVDNFHVLYSHGVPRNRIGKIYKEAREVFRYGSGVLAKKFKDYEDLGLSKSSFIKLVVCCPLLLVGDVDSEFVVVLDWLKKIGIEIEWIVRCMSCLRTFSWKRMIDTIKFVHQVGYSEKQMYDLFKADPRLLLEGSGKKMDLLLGWLIKSGVDVNVVRSCFVEHPDMLSSKCVQNLTTVVVFLYNIRMELDDIEHVLTNYMHILSKYSIKGHTTVCKELGVGKADLCRIIKDDPLELISLASKSEQMKAGREHYRDPRNYLDKTTFLLKMNYIENSEEMEEAMKMFKGRGDQLQERFDCLVEAGLDYNTVVRMIRRDPRILNLKRTVIEKKVDFIKNASDFPIECLVGYPDYFSHDLGIISARISMYQWLKKRNAITPTKSLSTIISYNEKQFVKHFVNMHPEEFLEATQKLGLTYPAIFLDTADVCALRHQNLLKMKNTVQPPWSLPIGILADAEKELRLLKSVANILGALFKEFFWFL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04371 646 Gene3D Transcription termination factor 3, mitochondrial 120 307 IPR038538 -
Trre10g04371 646 Gene3D Transcription termination factor 3, mitochondrial 308 577 IPR038538 -
Trre10g04371 646 FunFam mTERF family protein 113 264 - -
Trre10g04371 646 PANTHER CGI-12 PROTEIN-RELATED 275 566 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 Pfam mTERF 136 235 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 Pfam mTERF 275 452 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 Pfam mTERF 456 559 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 SMART mt_12 185 215 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 SMART mt_12 324 355 IPR003690 GO:0003690|GO:0006355
Trre10g04371 646 SMART mt_12 220 251 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04371 Trre-Chr10 52969074 52972574 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g04371 mTERF 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04371 - - psat:127118043 684.485