Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04370 ATGGGATCTCTTTCGCTTCTTCACAATGCAAACCTCTTCTCTCACTTCAAAAACCCCAATTTCTCACACCGAAACCCTAATTTATCACCTTCGTCTTCCTTCTCTCTTAAATCTCCAATTCGCATAAACTCCCGCTCAAAATCCACCCACATTCCCGCTCTTTCTTCATCAACTCCAATTCGCATCAAAGGCGCTGCAAAAATCGAAGCACAGCGTGCTCTAATTGATTATCTTCGCTTCACTCGAAATTACTCTTTCACAGACGCAGAATTCATCACCATAAACTCTCCACATTTCATCAATCACCTTATCTCCAAGATCAACATTCAAGACGGTGACGTTTTTCGTTCTCTCAAGTGCTATCTTATGTATAACCCTATTAACGAATTTGAACCCTTTTTAGAGAGTTTAGGAATTAATCAAACGGAATTGCAGTTATTTCTCCCTAAAGGTTTCATTTTTCTTAGTGATTATAGTCTCTTGCTTGATAATTTTCATGTATTGTATAATCAAGGGGTTCCGAGGAATAGAATAGGTAAAATTTACAAAGAAGCAAGAGAGGTTTTTGGGTATGATAGTGGTGTTTTGGCAAAGAAATTCAAAGATTATGAAAATTTGGGTTTGAGTAAATCTTCATTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGAATTTGTTGCTGTTCTTGATTGGTTGAAGAAAATTGGGATCGAGAGTGACTGGATTACGCGTTGTATGTCTTGTTCAAGAACGTATAGTTGGAAAAGAATGATCGATACAATAGAGTTTGTCCATGAAGTTGGATATTCTGAGAAACAAATGTATGATTTGTTTAAGGGAGAACCTAGATTGTTGTTGGAAGGGTTAGGGAAGAAGTTGTACATGCTTTTAGGTCGGTTGATTAAGTCTGGTGTTGATGTGAATGTGGTTAGTTCTTGTTTCGTAGAGCATCCCGATATGTTTCTAATTAAGCGCGTGAAAAATTTGTTGACCGTGATTGCTTTTTTGTATAATATTCGAATGGTACAAGATGATATTGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAACATTCGATAAAAGGTCATAGAACGGTTTGTAAGGAGTTAGGGGTTGGAAAAGCTGATTTATGTCGAATCATAAAGAATAATCCATTAGAGCTTATTAATTTGGCTTCGAAATTGGAACAGAAGAGGGCTGGAAGGGAACTCAGTAGTGACCCTCGTAATTATTTGGATAAAACAATTTTCTTGTTGAAAATGAACTATGTTGAGAATTCTGAGGAGATGGAAGAAGCAACGAAGATGTTTAAGGGGAGAGGTGATCAGTTACAAGATAGATTTGATTGCCTGGTAGAAGCTGGTTTCGATTATAATAGTGTGGTTAGAATGATAAAGCGAGCTCCTCAGATTCTTAACATGAAGAGAACTGTAATTCAAAAGAAGATTGATTTCATAAAAAACACTTCAGTTTTCCCAATAGAATGTCTTGTGAGATACCCAAGATACTTTTAG 1542 0.3658 MGSLSLLHNANLFSHFKNPNFSHRNPNLSPSSSFSLKSPIRINSRSKSTHIPALSSSTPIRIKGAAKIEAQRALIDYLRFTRNYSFTDAEFITINSPHFINHLISKINIQDGDVFRSLKCYLMYNPINEFEPFLESLGINQTELQLFLPKGFIFLSDYSLLLDNFHVLYNQGVPRNRIGKIYKEAREVFGYDSGVLAKKFKDYENLGLSKSSFIKLVVCCPLLLVGDVDSEFVAVLDWLKKIGIESDWITRCMSCSRTYSWKRMIDTIEFVHEVGYSEKQMYDLFKGEPRLLLEGLGKKLYMLLGRLIKSGVDVNVVSSCFVEHPDMFLIKRVKNLLTVIAFLYNIRMVQDDIEHVLTNYMHILSKHSIKGHRTVCKELGVGKADLCRIIKNNPLELINLASKLEQKRAGRELSSDPRNYLDKTIFLLKMNYVENSEEMEEATKMFKGRGDQLQDRFDCLVEAGFDYNSVVRMIKRAPQILNMKRTVIQKKIDFIKNTSVFPIECLVRYPRYF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04370 513 Gene3D Transcription termination factor 3, mitochondrial 159 300 IPR038538 -
Trre10g04370 513 Gene3D Transcription termination factor 3, mitochondrial 301 513 IPR038538 -
Trre10g04370 513 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 Pfam mTERF 421 513 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 Pfam mTERF 132 229 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 Pfam mTERF 269 446 IPR003690 GO:0003690|GO:0006355
Trre10g04370 513 PANTHER CGI-12 PROTEIN-RELATED 268 513 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04370 Trre-Chr10 52965971 52967512 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g04370 mTERF 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04370 - - psat:127118043 619.387