Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04369 ATGGGATCTCTTTCGCTTCTTCACAATGCAAACCTCTTCTCTCACTTCAAAAACCCCAATTTCTCACACCGAAACCCTAATTTATCACCTTCGTCTTCCTTCTCTCTTAAATCTCCAATTCGCATAAACTCCCGCTCAAAATCCACCCACATTCCCGCTCTTTCTTCATCAACTCCAATTCGCATCAAAGGCGCTGCAAAAATCGAAGCACAGCGTGCTCTAATTGATTATCTTCGCTTCACTCGAAATTACTCTTTCACAGACGCAGAATTCATCACCATAAACTCTCCACATTTCATCAATCACCTTATCTCCAAGATCAACATTCAAGACGGTGACGTTTTTCGTTCTCTCAAGTGCTATCTTATGTATAACCCTATTAACGAATTTGAACCCTTTTTAGAGAGTTTAGGAATTAATCAAACGGAATTGCAGTTATTTCTCCCTAAAGGTTTCATTTTTCTTAGTGATTATAGTCTCTTGCTTGATAATTTTCATGTATTGTATAATCAAGGGGTTCCGAGGAATAGAATAGGTAAAATTTACAAAGAAGCAAGAGAGGTTTTTGGGTATGATAGTGGTGTTTTGGCAAAGAAATTCAAAGATTATGAAAATTTGGGTTTGAGTAAATCTTCATTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGAATTTGTTGCTGTTCTTGATTGGTTGAAGAAAATTGGGATCGAGAGTGACTGGATTACGCGTTGTATGTCTTGTTCAAGAACGTATAGTTGGAAAAGAATGATCGATACAATAGAGTTTGTCCATGAAGTTGGATATTCTGAGAAACAAATGTATGATTTGTTTAAGGGAGAACCTAGATTGTTGTTGGAAGGGTTAGGGAAGAAGTTGTACATGCTTTTAGGTCGGTTGATTAAGTCTGGTGTTGATGTGAATGTGGTTAGTTCTTGTTTCGTAGAGCATCCCGATATGTTTCTAATTAAGCGCGTGAAAAATTTGTTGACCGTGATTGCTTTTTTGTATAATATTCGAATGGTACAAGATGATATTGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAACATTCGATAAAAGGTCATAGAACGGTTTGTAAGGAGTTAGGGGTTGGAAAAGCTGATTTATGTCGAATCATAAAGAATAATCCATTAGAGCTTATTAATTTGGCTTCGAAATTGGAACAGAAGAGGGCTGGAAGGGAACTCAGTAGTGACCCTCGTAATTATTTGGATAAAACAATTTTCTTGTTGAAAATGAACTATGTTGAGAATTCTGAGGAGATGGAAGAAGCAACGAAGATGTTTAAGGGGAGAGGTGATCAGTTACAAGATAGATTTGATTGCCTGGTAGAAGCTGGTTTCGATTATAATAGTGTGGTTAGAATGATAAAGCGAGCTCCTCAGATTCTTAACATGAAGAGAACTTGGTTGAAGAAGAACAATGCAATAAATCCTGCACTATCCTTGTGTACCATACTTTCAATTCATGAAAAACGATTTGTAAAATACATAGTGAATATACATCCTGAAGGTCCAACAATCTGGCAACATATCAAAAGTTTATCAAACAAAGATAAGAATTAA 1617 0.3636 MGSLSLLHNANLFSHFKNPNFSHRNPNLSPSSSFSLKSPIRINSRSKSTHIPALSSSTPIRIKGAAKIEAQRALIDYLRFTRNYSFTDAEFITINSPHFINHLISKINIQDGDVFRSLKCYLMYNPINEFEPFLESLGINQTELQLFLPKGFIFLSDYSLLLDNFHVLYNQGVPRNRIGKIYKEAREVFGYDSGVLAKKFKDYENLGLSKSSFIKLVVCCPLLLVGDVDSEFVAVLDWLKKIGIESDWITRCMSCSRTYSWKRMIDTIEFVHEVGYSEKQMYDLFKGEPRLLLEGLGKKLYMLLGRLIKSGVDVNVVSSCFVEHPDMFLIKRVKNLLTVIAFLYNIRMVQDDIEHVLTNYMHILSKHSIKGHRTVCKELGVGKADLCRIIKNNPLELINLASKLEQKRAGRELSSDPRNYLDKTIFLLKMNYVENSEEMEEATKMFKGRGDQLQDRFDCLVEAGFDYNSVVRMIKRAPQILNMKRTWLKKNNAINPALSLCTILSIHEKRFVKYIVNIHPEGPTIWQHIKSLSNKDKN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04369 538 Pfam mTERF 269 491 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 Pfam mTERF 132 229 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 PANTHER CGI-12 PROTEIN-RELATED 268 489 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 SMART mt_12 471 512 IPR003690 GO:0003690|GO:0006355
Trre10g04369 538 Gene3D Transcription termination factor 3, mitochondrial 298 527 IPR038538 -
Trre10g04369 538 Gene3D Transcription termination factor 3, mitochondrial 118 233 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04369 Trre-Chr10 52965770 52967512 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g04369 mTERF 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04369 - - psat:127118043 635.18