Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04339 ATGTCTGGGTTCGCTGTTCGCAAAGGTCATGTTATTAGGAATCGGGAAAGACATGTTTTACAGCAAACCTTTTTATGTTCCCGTGAAGGATTTAGGCATGAGAGGGGTTTAACTGCAGAAGAACGACAACGTCAACAAAAGAACACAACAAGATGTGGGTGTATGGCAAAATGTAGAGTGCACATAGACATTATCTCTAGAAGATGGTATGTAACTGTATTTGAATTTGAACACAACCATGAGCTGTTGAATGGAACTATGTGTGCATTTTTACCAGCCTATAGGAAAATGTCTCAAGGTGATATAGATGAGATTGAGCGCAACCGTATGGCAGGGATAAGACCATATCATGGTATATGGTTCGATGGCTAA 372 0.4032 MSGFAVRKGHVIRNRERHVLQQTFLCSREGFRHERGLTAEERQRQQKNTTRCGCMAKCRVHIDIISRRWYVTVFEFEHNHELLNGTMCAFLPAYRKMSQGDIDEIERNRMAGIRPYHGIWFDG 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04339 123 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 3 114 - -
Trre10g04339 123 Pfam FAR1 DNA-binding domain 2 83 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04339 Trre-Chr10 52745608 52745979 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g04339 FAR1 1.4e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04339 - - tpra:123884554 227.639