Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04332 ATGTCTACATATAGTGAAGCAACGGTGCATCTTGACAGTGATACAGAAGAAGAAGAAGAAGAAATTAATAGTGGTAATGGTGCTGACACCAATGGAGATGCAGAAGATATAGAATTTAATAGCGGCAATGGTGTTCGTACTGATAGAGATACACAAGGTAATGGCGCGTGCAGCCAACAACAGAAAGAGAACTCCGATGATTACAAATGTATAAGTGATTTGACAGATGATGATATAAGGGGTATGGAATTCAGCACAGAGGGAGAAGCTATAGCATTTTATACTATGTATGCACATCTCCATGGGTTTGCTGTAAGAAAAGATGATGTGCTACGTGATCGTGACAAAAAAATCATTGTTATGCGTCAATTACTTTGCAATAAAGAGGGTACTAGTGAAGGCCAGGAGAGGCCAACTATGCGAACAGGTTGTAAGGCGAAACTTCGAATAGTCTATGATATTATTCGTAAAAAATATAGAGTTTCTGTTTTCAACCCTACTCACAACCACGATTTGACTCCTGAACAATTTGTTCATTTGATTCCTAACTATCGTAGATTGACTGAAGAGGATAAACAAGTTGTTAATGGCTTGCATTCCCAAGGCAAAGAACAGGTAATTGATCTGGTGGCTACCATGTTGACTCACGATGAGAAATTGGGGATAGGACGTTATGCTAACAATTGGTTTCTTCCCAGCACATTCTCGCAATACGTGTTAACAAAGGATTCACCGAAAGAAGCCATGTTGAAAGGTTTTCAAAAAAGATTTATGGGTAATGCTGATTATATTTCAAAGATTTTTTTACCAATACATGTTGTCGAAGATATTCATTGGTTCCTTCTCATTATTGACTTTGATGCAAAAGAATTAGTCTATCTTGACTCATTTCAAAGTCCAAGAACTCTTGACAAGCGGAAGACTCAAATTAAAAAATTGACTCGGTTTATGGAACAATGGCTTATGGATTCGACTTTTTATGATGCCGGTTCGAGTCGTGGGCCAAAAATATCAGAGTTTAAGTTTGCCGCTCCACGAGGCTACGGAAGCCAAGGACAAAACTCGAATGATTGTGCAATTTGGGTGATTAAATGGATGATGCAAAAGGGAGATGGTGGATATAAGATTAAAGTGGATGAAGGCTCAAGGTTAGAAATTGCACTGCAATTAATTCTTCATCCATACAATAGAGAGAGAGATTTAATGCTGAAGAATGCGACGAAATGCAAGATCACCGCTTGA 1242 0.3833 MSTYSEATVHLDSDTEEEEEEINSGNGADTNGDAEDIEFNSGNGVRTDRDTQGNGACSQQQKENSDDYKCISDLTDDDIRGMEFSTEGEAIAFYTMYAHLHGFAVRKDDVLRDRDKKIIVMRQLLCNKEGTSEGQERPTMRTGCKAKLRIVYDIIRKKYRVSVFNPTHNHDLTPEQFVHLIPNYRRLTEEDKQVVNGLHSQGKEQVIDLVATMLTHDEKLGIGRYANNWFLPSTFSQYVLTKDSPKEAMLKGFQKRFMGNADYISKIFLPIHVVEDIHWFLLIIDFDAKELVYLDSFQSPRTLDKRKTQIKKLTRFMEQWLMDSTFYDAGSSRGPKISEFKFAAPRGYGSQGQNSNDCAIWVIKWMMQKGDGGYKIKVDEGSRLEIALQLILHPYNRERDLMLKNATKCKITA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04332 413 MobiDBLite consensus disorder prediction 44 62 - -
Trre10g04332 413 Pfam Ulp1 protease family, C-terminal catalytic domain 247 365 IPR003653 GO:0006508|GO:0008234
Trre10g04332 413 SUPERFAMILY Cysteine proteinases 205 367 IPR038765 -
Trre10g04332 413 ProSiteProfiles Ubiquitin-like protease family profile. 185 369 IPR003653 GO:0006508|GO:0008234
Trre10g04332 413 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 203 - -
Trre10g04332 413 MobiDBLite consensus disorder prediction 1 62 - -
Trre10g04332 413 Pfam FAR1 DNA-binding domain 93 173 IPR004330 -
Trre10g04332 413 Gene3D Adenoviral Proteinase; Chain A 133 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04332 Trre-Chr10 52715244 52717396 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g04332 Peptidase_C48 2.7e-10 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04332 - - tpra:123917899 265.774