Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04328 ATGTCCAGAGAAAGGGAGAGATTTTTTGATGAGATAGGAAAGAAGAGGGAAGGAGATGATTCTTTTCAGAAGGGAAGAATGTTAGGTCCTTCTGGAACACTAAATACTACTACCCCTTGTGCTGCATGCAAGCTTTTAAGACGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCATCTGTCCACAAAGTTTTTGGTGCTAGCAACGTCTCAAAGTTGCTAATGGAAGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCTAATGTAAGACTAAGAGATCCAGTATATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAATTCAATCATTATTAGGTGAACTTAATGCTATAAGGGAAGAAATACATAAATACAAACTTATGGAAGCTAACATGATTCCTTCTTCAGAGGATGTATCAATTGCTAGTACTCTACCATCTACAACAACACTACCAATGCATCCTTCTTCCATTTACTCACAACAAGAAAATCCTACCAATTATAGCTCAATTTCAAGTGATCATATTTCCTATTTTGATTAA 594 0.3704 MSRERERFFDEIGKKREGDDSFQKGRMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNAIREEIHKYKLMEANMIPSSEDVSIASTLPSTTTLPMHPSSIYSQQENPTNYSSISSDHISYFD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04328 197 MobiDBLite consensus disorder prediction 169 197 - -
Trre10g04328 197 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Trre10g04328 197 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Trre10g04328 197 Coils Coil 118 145 - -
Trre10g04328 197 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g04328 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 172 - -
Trre10g04328 197 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04328 Trre-Chr10 52681224 52682790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04328 27 157 AS2 family AT2G40470 79.851 1.36e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g04328 LOB 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04328 - - gmx:100786324 285.034