Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04327 ATGAACATAAATTTCCATAGTTTCCTCTTCCTTTTTCTCCTTTCAATCTTTTTCTTTTCCACCTTAGCTTTTGGTGCCACTCTATCCAAAGATGAAGTGGAAGCTCTTAAAGAGATAGCTAAGACACTTGGGAAGAAAGATTGGGATTTCAGTGTAGATCCATGTAGTGGAGAAAGAAATTGGACATCTATTGTTCAAGTGAAAGGGAGTGAAAATGCTGTCACATGCAATTGTACCTATGTCAATGCTACTGTTTGTCATGTGACTAACATAATTTTGAAAGTACAAAATCTCCCGGGCACTCTCCCAAAGGAATTGGTCAAGCTACCTTTTCTTCAAGAATTTGACGTTTCCCGCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGTTCCATGAATCTTGTTAACATCTCCCTCCTTGGAAATCGATTAACTGGTCCAATACCAATAGCTTTAACAAACATATCAACTCTCCAAAGTTTGGTATTGGACTCCAATCAATTCTCTGGAAATCTTCCTCCCGAGCTTGGGAATCTATCCCGACTTCAAAGACTGATAATTCCTTCCAACAATTTTACTGGAGAACTACCTGCAACATTGGCCAAACTCACCACATTACAAGATTTTCGAATTGCAGACAATCAATTCTCTGGGAAGATACCTGATTATATTCAAAACTGGACAAATCTCACAAAATTAGTTATTCAAGGGACTGGATTAAGTGGGCCAATTCCTTCTGGAATTTCAGTTTTGAAAAAATTAACTGACTTGAGAATCAGTGATTTAAGTGGATCTGAACAGTCACCTTTTCCTCGACTTAGTGATATGAAATTGAAAACTCTGATTCTAAGGAGTTGCAACATCAATGGAACACTGCCTGATTATCTTGGGGCAATGACTAGTCTAAAAAACTTAGATCTTAGCTTTAACAAATTGAGTGGACCAATTCCAAATGGCTATGATTCTCTACAAAAAGTGGACTACATATATTTAACTGCAAACCTTCTCACCGGACCAGTTCCTTCATGGGCACGAAAAGCTGATAACTTAGACATTTCATACAATAACTTCACTTTAAGCCAAGGGAGTCAATGTCAAGATGCAAATGTGAACTTGTTTTCTACCTCTTCGACCCGCAATGACTCAGGAATAGCTTCATGTTTGTCAAGCGTTGTTTGTCCTAAAACTTCATCATATGCTCTTCATATAAACTGTGGTGGAGGGTTGGTTACAGTCAATGGAAGCGCATATGACGATGATACAGAATCAGCAGGACCAGCTAGATTCCACCAGAGTGGGGGTAAAAATTGGGCATTTAGCACCACCGGTAACTTCATGGATATCGACGGCACTGACTCTTATACCTGGTTGAATAGATCTAATCCTGAACTATTCAAGGACGCGAGAATTTCTCCTACGTCTTTGACTTATTATGCATTTTGCATGGGAAATGGAAACTACACAGTAAATCTACATTTTGCGGAAATCATGTTCGCTGATGATCAAACATATGGAAGCCTAGGAAGACGTATATTCGATATCTATATTCAGGGAGAGTTAGTACAAAAGGACTTTAATATTGCAGAAGAAGCCGGAGGAATTGGTAAGCCAATCACAAAACCATTCACTGCTGTTGTGAGTCATAATACCTTGGAGATTCGCTTATATTGGGCCGGAAAAGGGACAATTAGTTTACCAGAAAGAGGAGTATATGGTCCTCTTATATCAGCTATAACTGTTAAACCAGATTTTACCCCTCCTTCTGTAAGTGGAAGTAGCAGCATATCTGCCGGAGCTGTGGTTGGAATTGTGGCTGCAGTAGCAATTGTTATCATCCTATTATTTTTTATACTTTGGTGGAAAGGCTGTTTTGGAAAGAAAAGCTCTTTAGAAAGAGAGGTAAAGGGTTTAGACCTACAAATGAGTTTATTTAATGTAAGACAAATCAAAGGAGCAACAAATAACTTTGATATTGCCAATAAAATTGGAGAAGGAGGATTTGGTCCAGTATACAAGGGTCGACTATCAGATGGTACATTGGTAGCAGTCAAGCAACTTTCTGCTAAATCAAAGCAAGGAAATCGCGAGTTTTTAAATGAAATTGGCATGATTTCGGCTTTGAACCATCCTCATCTTGTTAAACTCTATGGATGTTGTGTGGAAGGAGATCAGTTAATGTTAATATATGAATATTTGGAAAATAATAGTCTTGCTCGCGCTTTATTTGGGGCTCCAGAACAACAAATAAAATTGGATTGGCCAACAAGATACAAGATTTGTATTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGAGACATCAAGGCAACTAATGTGTTGCTTGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCCAAACTCGATGAAGAAGAGAACACTCACATTAGCACTCGAATAGCCGGGACATACGGATATATGGCGCCAGAATATGCTATGCATGGTTATTTGACCGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGTCTTGGAAATCTTACATGGTACTAACAATACTATTTTTCGACAAAAAGGATCGGAAGCATTCCATCTTCTTGATTGGGCACATGTGTTGAAAGAAGAAAATAATCAAATGGAGCTAGTTGATAAAAGATTGGGTTCAAATTTCAACAAAGAAGAAGCAATGGTGATGATAAATGTAGCACTCTTATGCACTAATGTTACTTCAGCACTTAGGCCTGCAATGTCTTCAGTGGTAAGCATGTTAGAGGGTAAAATTGGTATTCAAGAATTGGAATTAGAGTCAAGTGAAGTGTTGGATGAAAAGAAAATGGATGCAATGAGACAATATTATAATGACCATAGTATATCAATGGAAGAAGGACCATGGACTGCTACATCTTCTTCAGTAGCAACTGATCTTTATCCTGTACACTTAGATTCTTCTTATTTGGAGAAAAGAGTTTAG 2988 0.3785 MNINFHSFLFLFLLSIFFFSTLAFGATLSKDEVEALKEIAKTLGKKDWDFSVDPCSGERNWTSIVQVKGSENAVTCNCTYVNATVCHVTNIILKVQNLPGTLPKELVKLPFLQEFDVSRNYLNGTIPKEWGSMNLVNISLLGNRLTGPIPIALTNISTLQSLVLDSNQFSGNLPPELGNLSRLQRLIIPSNNFTGELPATLAKLTTLQDFRIADNQFSGKIPDYIQNWTNLTKLVIQGTGLSGPIPSGISVLKKLTDLRISDLSGSEQSPFPRLSDMKLKTLILRSCNINGTLPDYLGAMTSLKNLDLSFNKLSGPIPNGYDSLQKVDYIYLTANLLTGPVPSWARKADNLDISYNNFTLSQGSQCQDANVNLFSTSSTRNDSGIASCLSSVVCPKTSSYALHINCGGGLVTVNGSAYDDDTESAGPARFHQSGGKNWAFSTTGNFMDIDGTDSYTWLNRSNPELFKDARISPTSLTYYAFCMGNGNYTVNLHFAEIMFADDQTYGSLGRRIFDIYIQGELVQKDFNIAEEAGGIGKPITKPFTAVVSHNTLEIRLYWAGKGTISLPERGVYGPLISAITVKPDFTPPSVSGSSSISAGAVVGIVAAVAIVIILLFFILWWKGCFGKKSSLEREVKGLDLQMSLFNVRQIKGATNNFDIANKIGEGGFGPVYKGRLSDGTLVAVKQLSAKSKQGNREFLNEIGMISALNHPHLVKLYGCCVEGDQLMLIYEYLENNSLARALFGAPEQQIKLDWPTRYKICIGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEILHGTNNTIFRQKGSEAFHLLDWAHVLKEENNQMELVDKRLGSNFNKEEAMVMINVALLCTNVTSALRPAMSSVVSMLEGKIGIQELELESSEVLDEKKMDAMRQYYNDHSISMEEGPWTATSSSVATDLYPVHLDSSYLEKRV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04327 995 SUPERFAMILY L domain-like 85 359 - -
Trre10g04327 995 Gene3D Transferase(Phosphotransferase) domain 1 733 944 - -
Trre10g04327 995 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Trre10g04327 995 Gene3D Ribonuclease Inhibitor 31 202 IPR032675 -
Trre10g04327 995 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Trre10g04327 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Trre10g04327 995 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 941 - -
Trre10g04327 995 SUPERFAMILY Protein kinase-like (PK-like) 641 933 IPR011009 -
Trre10g04327 995 Gene3D Ribonuclease Inhibitor 203 392 IPR032675 -
Trre10g04327 995 FunFam Leucine-rich repeat transmembrane protein kinase 200 401 - -
Trre10g04327 995 Pfam Protein tyrosine and serine/threonine kinase 659 926 IPR001245 GO:0004672|GO:0006468
Trre10g04327 995 ProSiteProfiles Protein kinase domain profile. 657 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04327 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 584 - -
Trre10g04327 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 957 - -
Trre10g04327 995 Gene3D - 397 583 - -
Trre10g04327 995 Gene3D Phosphorylase Kinase; domain 1 625 732 - -
Trre10g04327 995 CDD STKc_IRAK 663 931 - -
Trre10g04327 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
Trre10g04327 995 SMART serkin_6 657 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04327 995 Pfam Malectin domain 401 579 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04327 Trre-Chr10 52661984 52671872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04327 22 958 Receptor kinase-like Gene Family AT1G53420 56.335 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre10g04327 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04327 - - gmx:732563 1444.48