Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04311 ATGGAATCTGTTCGATGCTTCGTTTTACACATTTCCCTCTTTCTTTTGGTGGCAGCTAGTGCCAATGTAAATCACTATGTTAGTGGAGGTATGCCACCGAATGTAATCGTGGCGAAAGATGGCAGTGGCCAATATATGACGGTCACTGCCGGAATAAACTCATATCCGGCAAATTACAAAGGCCAATATGTTATCTATGTGAAAGCTGGCATCTACAACGAGTACATAACTGTTGATGATAAAAAACCTAACATTATCTTGTATGGTGATGGTCCTACCAACACCATCATCACTGGAAGCAAAAACTGCAATCAAGGACTCCAAATGAAGGACACTGCCACATTCACCACCTTTGCTCCAAATTTTACTGCCAAGTCAATTAGTTTTGAGAACACAGCTGGTGCAATAGGTATGCAAGCGGTAGCAATCAGAGTTGGAGGTGATAAATCAGCATTTTTTGATTGTGCATTTCACGGTCATCAAGATACACTTTATGTAGACCGCGGATTTCAGTTCTACCGCGAGTGTGTGATTTCCGGAACAATTGACTTCATATATGGTCATTCCAGTACCTTAATCCAGAATTCTAAGATTTTGTTGAGAAAGCCCCTTGATAGACAAAGCAATGTTGTGGTGGCAGATGGCACCGCCCAATACAACAGGTTCAAAACTGGTATAGTGCTGCAAAACTGTTCTATCATACCAGATGATGACCTCAAGCCTTATCTGAACATCATAAAGACTTACTTAGCAAGACCGTGGGATCAATTTTCCACAGCCGTCTTCCTTCAAAACTATATCGCTGATTTTGTTGATAGAGAAGGATATATGATTTGGTCAAAAAAACAGCCAAATATTGAACACCCTTACTTTGCTGAGTTTGGCAACACTGGACCTGGTGCCAATGCTACAGCAAGAGTCTACTGGGCCAAGGGTCTTATCACCAAGAAGGCGGCTTCTGTATTCACAGCCGAGCGGTTCATCAATGCTAGCACTTGGTTGCCCGCAACCGGAATTCCCTATGATAATGGATTGAGATTAACTTAA 1047 0.4212 MESVRCFVLHISLFLLVAASANVNHYVSGGMPPNVIVAKDGSGQYMTVTAGINSYPANYKGQYVIYVKAGIYNEYITVDDKKPNIILYGDGPTNTIITGSKNCNQGLQMKDTATFTTFAPNFTAKSISFENTAGAIGMQAVAIRVGGDKSAFFDCAFHGHQDTLYVDRGFQFYRECVISGTIDFIYGHSSTLIQNSKILLRKPLDRQSNVVVADGTAQYNRFKTGIVLQNCSIIPDDDLKPYLNIIKTYLARPWDQFSTAVFLQNYIADFVDREGYMIWSKKQPNIEHPYFAEFGNTGPGANATARVYWAKGLITKKAASVFTAERFINASTWLPATGIPYDNGLRLT 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04311 348 PANTHER PECTINESTERASE 33 335 - -
Trre10g04311 348 Pfam Pectinesterase 34 330 IPR000070 GO:0030599|GO:0042545
Trre10g04311 348 FunFam Pectinesterase 4 31 345 - -
Trre10g04311 348 Gene3D - 29 345 IPR012334 -
Trre10g04311 348 SUPERFAMILY Pectin lyase-like 31 343 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04311 Trre-Chr10 52497821 52498989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04311 34 345 Carbohydrate Esterase AT2G47030 43.671 2.23e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04311 K01051 - gmx:100808559 390.578