Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04301 ATGGCTCGTGTTCCGTTTTCGTTTTGGGTGGCTCCGTCGTGGAGTGTGTGTTGTGTTGGCTCCCCTGTTTTGGCTTCACCTTGCCCTTCTGTTGCGTTTGATTCTGATCCTCGCCGGATTCTGTCTCCGGTGGTCACATGTTTTGGTGGCGGTGCCGGAGGTTCTGTTTTGCCGGAGTTTCAACATACCTCAGATTTTGTAAATTGGGGCACTGTTAATATATTTGAAAAAATGGGTGCTTCTGCTTATGATCAGAGTTATAATGGTAATCTTGCGCCATTGGAGTTGTCTAGGAAGAGGAAAACTAGGAGTAGAGGAAAAGGGAATAAATCTGTGGCTGAGATTCTAGCTAAGTGGAGGGAATACAATGAGCGTCTTTATGCAGTTAAAGATGATGGTAAACCGAAGCGTAAAGCGCCGGCGATAGGTTCAAAGAAAGGGTGTATGAAAGGGAAAGGAGGACCTCAAAACTCAGAGAATATGTATAGAGGTGTTAGACAGAGAACTTGGGGGAAATGGGTTGGTGAAATTAGGGAACCAAATAGAGGTAGTAGACTTTGGTTAGGTACTTTTCCTACTGCTCAAGATGCTGCTCTTGCTTATGATTATGCTGCTAGAGCTATGTATGGTCCTTCGGCGCGACTTAATTTCCCGAATGTATCAGATTATAGTTCTATTAAGGAATATTTGAAGGATTCTTCATCAGATACTGCTACTGCTACTGCCGCTGCTAGCTGTTGTTCTTCAGTGGTGACAACTCCTGCAACATCTGAGACAACAACTTTGTCAAGTCATTCTGAGGTTTGTGGTGTTGAGGATGTTAAGGAGATGTTTAAGATACCTGTCACTATGAACAACAATACTGTTGATGTTTGTTATGAAGTTTCGTCTCCAACTAGTAGAATTAAGCAAGAGCCAAAGGATGAGTTTGCTTATATCATTGACCCTGGTGGTGGTGAAATCCAAAATGCCAAATTAGAAGGAACACAAAAACCAAAGGATGAGTTTGCTGATATCATTGACCCTGGTGGTGGTGAAATCCAAGATGCCAAATTAGAAGGAACACAAAAGCTGATGGATGAGCTTGCTGATATCATTGATCCTGGTGGTGGAGAAATTCAAGATGCCAAATTAGAAGAAACACAAACACAGAAACAGGATGTTGTGCAGGGTTATTCAATGGATGAGTTCTTTCAAGTGGAAGAGCTTTTGGGGCAGTTAGACAATAATCCAGTTGATGAATCTGGGTTGATGCAAACTTTGGATTGCGGACAAATGAGTTTTCCTGAAGAGAGTAATCCTCAGGTTGGGGCTACATCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAGCTTTTGGGGAGTTTCCCTCATATGGAACAAACAGACACAACATCAGGTGTTGATTATGCATTAGATTTCTTTAAAATAGAAGAACCTGTGAACTGTAATGGTGCACTTGAAGATACACCATATCTTGATTTGAATTTTGATGATGTGAATTATGATTCAAGAGGAATGTAA 1527 0.4139 MARVPFSFWVAPSWSVCCVGSPVLASPCPSVAFDSDPRRILSPVVTCFGGGAGGSVLPEFQHTSDFVNWGTVNIFEKMGASAYDQSYNGNLAPLELSRKRKTRSRGKGNKSVAEILAKWREYNERLYAVKDDGKPKRKAPAIGSKKGCMKGKGGPQNSENMYRGVRQRTWGKWVGEIREPNRGSRLWLGTFPTAQDAALAYDYAARAMYGPSARLNFPNVSDYSSIKEYLKDSSSDTATATAAASCCSSVVTTPATSETTTLSSHSEVCGVEDVKEMFKIPVTMNNNTVDVCYEVSSPTSRIKQEPKDEFAYIIDPGGGEIQNAKLEGTQKPKDEFADIIDPGGGEIQDAKLEGTQKLMDELADIIDPGGGEIQDAKLEETQTQKQDVVQGYSMDEFFQVEELLGQLDNNPVDESGLMQTLDCGQMSFPEESNPQVGATSSFFYELENPDAKLLGSFPHMEQTDTTSGVDYALDFFKIEEPVNCNGALEDTPYLDLNFDDVNYDSRGM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04301 508 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 97 463 - -
Trre10g04301 508 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 SMART rav1_2 161 224 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 MobiDBLite consensus disorder prediction 134 160 - -
Trre10g04301 508 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Trre10g04301 508 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 CDD AP2 162 220 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 SUPERFAMILY DNA-binding domain 161 218 IPR016177 GO:0003677
Trre10g04301 508 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Trre10g04301 508 Gene3D AP2/ERF domain 161 220 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04301 Trre-Chr10 52404568 52410420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04301 98 503 AP2-EREBP Transcription Factor Family AT2G40340 35.854 3.12e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g04301 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04301 - K09286 tpra:123924097 670.618