Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04294 ATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTTTGAGACGCAGATGCGCAAAAGATTGTACGTTTGCTCCTTATTTTCCTTCTCATGAACCCCAAAAGTTTGCTATTGTTCATAAGGTTTTTGGGGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCAATTCACCAAAGAGCAGATGCAGTGAGCAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGGGATCCAGTTTATGGTTGTGTTGGAGCAATATCTTATTTACAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTTTGCATCCAAATGCAAAATGAACAAGTGATTCCAACACAAGAAATTAATCAAGATCAGAAATCTTATTTTATTCAAGATGAACTCACTCAATATCTTAATTATGGTTCTTCTTCTAGTAATAATGTAATTCATGATTCTCTTAAGAGAGATAATATGTATGGACATGATATGGTTTCTTGA 501 0.3633 MGGNSPCASCKLLRRRCAKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTQEINQDQKSYFIQDELTQYLNYGSSSSNNVIHDSLKRDNMYGHDMVS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04294 166 Coils Coil 85 105 - -
Trre10g04294 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Trre10g04294 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 134 - -
Trre10g04294 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04294 Trre-Chr10 52349542 52350960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04294 3 131 AS2 family AT2G30130 79.699 1.05e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g04294 LOB 4.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04294 - - cave:132186671 284.263