Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04282 ATGAATCTTTCTAGATCTTTGTGGTTTGTAACAGTAACAGTGTGTTTCTTGTTTCTTAACTTGAGTTTTTGTTGCTATTCTTTGAATGAAGAAGGTAATGCTCTTTTGAAGTTGAAGAAGAGAATAACTAGTGACCCTTTTGATGCTTTGTTAAATTGGGTTGATGATGAAGTTGTTCTTGATCCTTGTGATTGGTTTGGAGTTGAATGTTCAGATACAAAAAAAGTTGTAATCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACTCTAGCACCAGAGCTTATGAACCTAGTTCACATAAAGTCTATTGTTTTAAGGAACAACTCTTTCTATGGAACCATACCTGAAGAAATTGTAAGCTTGAAAGAATTGGAGATTTTGGATTTGGGATATAACAATTTCAGTGGAAATCTAGATGCTAATTTTGGCCAGAATTTCCAATCACTAGCAATTCTTTTGCTAGACAACAATGAGCTCCTTTTTGGGTTCTCTCCCAAAATCAATGAGCTGAAAATACTTTCCGAGTGTCAAGTAGATGAAAATCGGTTAATCGATGCAGCTAAGATGCCATCTTGTTCCAAAAGATCCATCACATGGCATGTTCATGAAAATGAAGGTCCTAGGAAACTGCTACAATATCAGAAAATTCACCGTACCTCTCGTAATAATACTTCTCGTAATGATACCTCTCATAATCATACTTTTCGTAATCAGACTTCGCCACAATATAGATTTCCTCCTTCACATTCTCCATCGGCCGCAGCAGTACCAACGGTCCCGAATCTAGCTTCAGATTCTCCTAATCAAAATGCTTCTGATTCTCCTAATGAAAATGCTTCTGATTCTCCAACTAACACCACATCATCAAAGAAGAATAAAGTTCCTATTCTTGCCGGAGTTATTATTGGCGGTGCTGTTTTTCTCGTGATTTCAAGCATTGGTATATACCTTTGTAAAACCAACAAAGTAGCTATTGTTAAACCTTGGACTACAGGAATAAGTGGACAACTTCAAAAGGCACTTGTCACCGGTGTGCCAAAGCTAAAGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGCAATGTAATTGGTAATTCGCCGATCGGTACTTTGTACAAAGGAACTTTGTCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTGTCATATCAAAGAATTGGACAAAGGCTTTAGAAGCTCAATTTAGGAAGAAGATAGACACATTATCAAAAGTGAATCACAAGAATTTTGTCAATCTTATTGGTTATTGTGAAGAAGAAGAGCCTTTCACTAGAATGCTGGTTTTCGAATATGCTCCGAATGGAACGTTATTTGAGCATTTACACGTAAAAGAAGCTGAGCACTTGAATTGGGTACCAAGACTTAGAATTGCAATGGGAATGTCTTACTGCCTACAACATATGCATGAATTGGACCCTCCTGTAGTCCTTACCAACTTGAGTTCTTCCGCCGTCCACCTAACCGATGACTACGCTGCAAAAGTCTCGGATTTGAGTTTCTCTTACGAAATAGATTCATCCGAAAAGAAACCTGATGGTAAGAAACAAAATGACATGATGCAATCAACAAGTCCGGCAAGTAATGTTTACAACTTTGGTGTTTTGTTATTCGAAATGGTTACCGGTAGAATCCCTTACTCGGTTGATAATAGCTCGCACAAAAATTGGGCATCACATTATCTAAAATGGGATAAACCACTTAAGGAAATGGTGGATTCAACTCTAACATCTTACCAAGAAGATCAAGTGGAACAAGTTGCTGAATTGATAAGAGTTTGTGTCGATCCGGATTCGGAGAAGAGACCGAGAATGAATGAAGTCAGTGAGAAATTGAGAGAGATAACGAAAATGTCGCCCGAATTTGTAGTTCCAAAACTTTCTCCACTTTGGTGGGCTGAGATTGAGATTTCTTCTGCATAA 1944 0.3776 MNLSRSLWFVTVTVCFLFLNLSFCCYSLNEEGNALLKLKKRITSDPFDALLNWVDDEVVLDPCDWFGVECSDTKKVVILNLKDLCLEGTLAPELMNLVHIKSIVLRNNSFYGTIPEEIVSLKELEILDLGYNNFSGNLDANFGQNFQSLAILLLDNNELLFGFSPKINELKILSECQVDENRLIDAAKMPSCSKRSITWHVHENEGPRKLLQYQKIHRTSRNNTSRNDTSHNHTFRNQTSPQYRFPPSHSPSAAAVPTVPNLASDSPNQNASDSPNENASDSPTNTTSSKKNKVPILAGVIIGGAVFLVISSIGIYLCKTNKVAIVKPWTTGISGQLQKALVTGVPKLKRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEIAVASVSVISKNWTKALEAQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWVPRLRIAMGMSYCLQHMHELDPPVVLTNLSSSAVHLTDDYAAKVSDLSFSYEIDSSEKKPDGKKQNDMMQSTSPASNVYNFGVLLFEMVTGRIPYSVDNSSHKNWASHYLKWDKPLKEMVDSTLTSYQEDQVEQVAELIRVCVDPDSEKRPRMNEVSEKLREITKMSPEFVVPKLSPLWWAEIEISSA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04282 647 FunFam Nuclear pore complex protein NUP107 28 189 - -
Trre10g04282 647 FunFam Inactive receptor-like serine/threonine-protein kinase 332 439 - -
Trre10g04282 647 MobiDBLite consensus disorder prediction 254 290 - -
Trre10g04282 647 Gene3D Phosphorylase Kinase; domain 1 331 439 - -
Trre10g04282 647 Gene3D Transferase(Phosphotransferase) domain 1 440 630 - -
Trre10g04282 647 MobiDBLite consensus disorder prediction 220 290 - -
Trre10g04282 647 ProSiteProfiles Protein kinase domain profile. 358 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04282 647 Pfam Protein tyrosine and serine/threonine kinase 361 619 IPR001245 GO:0004672|GO:0006468
Trre10g04282 647 SUPERFAMILY Protein kinase-like (PK-like) 343 619 IPR011009 -
Trre10g04282 647 SUPERFAMILY L domain-like 35 186 - -
Trre10g04282 647 Gene3D Ribonuclease Inhibitor 29 196 IPR032675 -
Trre10g04282 647 PANTHER PROTEIN MALE DISCOVERER 2 10 646 - -
Trre10g04282 647 MobiDBLite consensus disorder prediction 220 247 - -
Trre10g04282 647 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04282 Trre-Chr10 52260718 52264196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04282 15 627 Receptor kinase-like Gene Family AT2G35620 25.781 3.16e-42 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre10g04282 PK_Tyr_Ser-Thr 6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04282 - - gmx:100820416 791.186