Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04279 ATGAATGATCCTAGATCAAAGATGATGATTTCTCCTGGTTTATTACCAACTGAATCATTACTAGATTCATTGGTTTTAATAACCAATGAAATTAGTTCAATTGAAAAATTTCCATTAGTACAAATAAAAAATGTATCATCTATGATAAGAAGGATTAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATACACCACTTCCACCTTCATCAATTCTTTGTTTCACAGAAATATTTTCTGTGATTACAAGAGTTAAGATTTTGATTCAAGAGTTGAAAGATGGAAGTTCTCTTTGGAGTCTAATACAATTAGAGTTCATTTCAAATCAATTTTTTGTGCTTGTAAAAGAATTTGGAAGAGCTTTTGATATTCTTCCTTTGAATTTGCTTAATATAACACATGATATAAAGGAGCAAATTGAGCTTGTTCATAAACAAGCTAAGAGAGTTGAATTGTTCATTGATCCTAGAGAGATTCAAAGAAGAGAAAAGCTTTTACAAGTAATGTCGAAAAATTGTTTACAAAATAATAAGAACAATAAAGGGTTTATTGATTTTTTGAAAGTGGAAGAAATTATGAGTAGCATTGGTTTGATAACTTTATTGGATTATGTCGAAGAAATATCGAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACAGGTGGACTAATCGTCGTCTCAAATATAAACAATCTTATGTTGCTCGTTTCGTATACCAAATCAATGGTATTCCGAAACGGAGAAAAAAGTGATGGCGAATATTCGGATGAGAAATGGATAAATTCTGGTCACCATACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCATTAATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCTACGAAAACAATGTCTCGGTGAACGAACCAAAGGGAAACAACAACAGTGGTAGTAGCAGCAAGAGGCACAAGAATGAGAATGCAATTGATCATATTTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTTGGAAAATTAGCAACTGGTTCGACCAATATCCAAAGACAATCCGCGTACGAGATTCGTCTGCTCGCAAAAACCGGTGCGGACAACCGAAGAATCATAGCCGAGGTAGGCGCTATTCCGTTTCTAGTAACACTTTTAGCATCCAAAGATTCAAGAATCCAAGAACACGTTGTAACCGCCTTGTTCAACCTATCGATCTACGACAACAACAAGATTCTAATCATGGCAGCCGGAGCTGTCGACAATATAGTCGAAGTACTCGAATCGGGAAAAACAATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGCTTATCAATGTTAGATGATTGTAAAGTGCAAATTGGAGCAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATTGGTAAAAGAGATGCTGCTATTGCATTATTTAATCTTGCAGTATATAACCCTAATAAGTTAAGTATTGTTAAAAGTGGAGCAGTTAATTTACTTGTTGAGTTGTTGATGGATGATAAAGCCGGTATAACGGACGATTCATTAGCGGTGCTTGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAGAATAGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCTGTTAAAGGGAAGGAAAATTCAATAACTGTTTTACTTGGATTGTGTAAAGAAGAAGGAGAATTGGTTGCAAGGAAGTTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCAGATGGTTCTTTGAGAGCAAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 1896 0.3539 MNDPRSKMMISPGLLPTESLLDSLVLITNEISSIEKFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTPLPPSSILCFTEIFSVITRVKILIQELKDGSSLWSLIQLEFISNQFFVLVKEFGRAFDILPLNLLNITHDIKEQIELVHKQAKRVELFIDPREIQRREKLLQVMSKNCLQNNKNNKGFIDFLKVEEIMSSIGLITLLDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNGEKSDGEYSDEKWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSVNEPKGNNNSGSSSKRHKNENAIDHISANKASKDAVKMTAEFLVGKLATGSTNIQRQSAYEIRLLAKTGADNRRIIAEVGAIPFLVTLLASKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVNLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNSKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04279 631 SMART arm_5 454 495 IPR000225 GO:0005515
Trre10g04279 631 SMART arm_5 412 453 IPR000225 GO:0005515
Trre10g04279 631 SMART arm_5 371 411 IPR000225 GO:0005515
Trre10g04279 631 SMART arm_5 537 578 IPR000225 GO:0005515
Trre10g04279 631 SMART arm_5 496 536 IPR000225 GO:0005515
Trre10g04279 631 ProSiteProfiles U-box domain profile. 260 302 IPR003613 GO:0004842|GO:0016567
Trre10g04279 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 301 IPR013083 -
Trre10g04279 631 MobiDBLite consensus disorder prediction 303 323 - -
Trre10g04279 631 MobiDBLite consensus disorder prediction 303 318 - -
Trre10g04279 631 SUPERFAMILY ARM repeat 341 620 IPR016024 -
Trre10g04279 631 Gene3D - 302 455 IPR011989 -
Trre10g04279 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Trre10g04279 631 FunFam RING-type E3 ubiquitin transferase 304 459 - -
Trre10g04279 631 Pfam Armadillo/beta-catenin-like repeat 373 410 IPR000225 GO:0005515
Trre10g04279 631 PANTHER U BOX DOMAIN-CONTAINING 43 625 - -
Trre10g04279 631 SUPERFAMILY RING/U-box 260 303 - -
Trre10g04279 631 Gene3D - 456 620 IPR011989 -
Trre10g04279 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 382 424 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04279 Trre-Chr10 52249631 52251727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04279 19 630 U-box Gene Family AT3G46510 34.333 4.02e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04279 - - tpra:123924117 1085.48