Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04274 ATGGATTCCAAGGATCACAAGTTGAAGAATGTTGGAAAAGCCAAAGTGGTAGAACCTGTGAAGAATGTTGGAAAAACCAAAGTAGTAGAGCCTGTGAAGAATGTTGGAAAAGCCAAAGTGGGAGAAACAGCAAATCATCTTGGAAAACCCAAAGTTGTAGAGCCTGGAAAGATTGATGGAAAAGCCAAACTGATAGAACAATCAAAAGCAGCTGAAGTTGAAAAGTCAAACTATGTTGATTTGGACACTGATGTTGAGAATCCTTTTTTGGATAAGAGTATCAATGAAGACAATGAAGATGACAATGAAGTTGAGATGGAGTTACCATTTGATCCAGTCAAAGATGTAACCAAGAAGAAAGAAGTCTGGAGGCTAGGTGTTTTTGTGGAGGATTTATGGACTGTATACAAAGGAGATGTTGAGGATCACATGGAATTGCTGATAAGGGACATCAAGGGGGACACTATCCAAGCTATTATAATGCAAACTGACATTCAAACTTGGAAGCCAAAATTGTGTGAGGGGAAAACATATAACATGCGAAATTTTCGAGTTGCTGAAAATGATGCATCTTACAAGATGTCTCCGCACAAATATAGATTGCAGTTTGTTGGTGCTACCAGAGTTGCGGAAGAAAGTATTCGTGGAATGCCACTGACTGCATTCAACTTTAAGGATTTTTCAGAAATCCAAGATGGGAAGTATAGGGCTGATCTGTTAGTTGATGCTATTGGAGTAATTAATTCTGTAGGAAAGTTTGTTACTGCAACTCAGACAAAGAAAGGAAGTGTTGCATTTACTATTAAAGATTTAAGGGACAATGTTATGGATTGCACTCTTTGGGATGCATTATCCGTTGAATTCATGAATTTCTACAACTCTCAATCTGACGTTGGCCGCATTGTTTTGATCTTGAAGCATGCTAGAGTCAAAGAACCACAAGGTTCATACCCATTGCAACTAACTAATGTATGGAATGGAACAAAGCTTTTGTTTGATGACAAAATACCAGAAATCCAAGCTTTTATTCAAAGTTTGCCCAAAGATGTGGTTTATATGTCACAAAATAAGGAAGCTAGCAATTCAACTGCATACTACACCCAATCCACTCATGCGACACAGTTCAATTCTGATGAAAACTTCTTGAAGCAAGCCCGTGTCATTAGCTTGGCAGATATGAAAAAACTTAAACAGGATACTTTCTGTGTTACCGTCGTTACCACTTCTCACATCAGGGTTTCGAACCAAGGATGGTATTTTTTTGCTTGTCCTGATTGCAACTGTAAAGCAGAAGGATTTCAAGCACCTTACGTCTGCAAGAAAGGGCACAAGATAGATGTTCCTAACATCAAGTATAAGTTGGATGTTGAGGTATACGATGGGCATGAGACAGCAAAATTTGTTTTCTGGGATAATACATTGGAGGAGCTGATTGGCATGACTGCAGCAACTCTACTAGAGAAAGAGAAGAAGAAAGGCCTAGGTGACCCACAAGATTATCCTCAGATTATGAACTCAATCATGGAAAGAGTTTTTGCATTTAGGGTCAAATGGACACCTGGATGGGGTGGTCAAGCATCTGTGTCATTTTGTAAAGATAGCAAAGAGTTGGTTGACAAAATCCAGCAACAACTCCCAGTTGGTCAGAGTATTATAAAAGAGAATGATGCTAGAGTGGAAGAAGTTGAAGAAGATGTTGAAGAACCACCTGAAGTTATTACTGACTCACCTCAACCACAGAAGTTCATACAAGAGGATTTAGACAATTTTGCTTCCCTTGATGAATCTATTCTCTCCACTCCAAATGCATCTGTCTCAGCTGAAAATGAGTTTTCTGCTTCATCCCACAAAACTCCAGGAAAAAGGGGTGCTGCCAAAAATTTGCCAATTGAGACAGTTGGCATGGAAACACAGTTATCATCAAGCAGAGGCCGCAAGCTCATTAAGAAAGAGAAGATGTAA 1962 0.3919 MDSKDHKLKNVGKAKVVEPVKNVGKTKVVEPVKNVGKAKVGETANHLGKPKVVEPGKIDGKAKLIEQSKAAEVEKSNYVDLDTDVENPFLDKSINEDNEDDNEVEMELPFDPVKDVTKKKEVWRLGVFVEDLWTVYKGDVEDHMELLIRDIKGDTIQAIIMQTDIQTWKPKLCEGKTYNMRNFRVAENDASYKMSPHKYRLQFVGATRVAEESIRGMPLTAFNFKDFSEIQDGKYRADLLVDAIGVINSVGKFVTATQTKKGSVAFTIKDLRDNVMDCTLWDALSVEFMNFYNSQSDVGRIVLILKHARVKEPQGSYPLQLTNVWNGTKLLFDDKIPEIQAFIQSLPKDVVYMSQNKEASNSTAYYTQSTHATQFNSDENFLKQARVISLADMKKLKQDTFCVTVVTTSHIRVSNQGWYFFACPDCNCKAEGFQAPYVCKKGHKIDVPNIKYKLDVEVYDGHETAKFVFWDNTLEELIGMTAATLLEKEKKKGLGDPQDYPQIMNSIMERVFAFRVKWTPGWGGQASVSFCKDSKELVDKIQQQLPVGQSIIKENDARVEEVEEDVEEPPEVITDSPQPQKFIQEDLDNFASLDESILSTPNASVSAENEFSASSHKTPGKRGAAKNLPIETVGMETQLSSSRGRKLIKKEKM 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04274 653 Pfam Replication factor-A C terminal domain 414 518 IPR013955 -
Trre10g04274 653 Gene3D - 366 544 IPR012340 -
Trre10g04274 653 SUPERFAMILY Nucleic acid-binding proteins 108 210 IPR012340 -
Trre10g04274 653 MobiDBLite consensus disorder prediction 601 616 - -
Trre10g04274 653 SUPERFAMILY Nucleic acid-binding proteins 397 540 IPR012340 -
Trre10g04274 653 Gene3D - 217 351 IPR012340 -
Trre10g04274 653 MobiDBLite consensus disorder prediction 601 653 - -
Trre10g04274 653 CDD RPA1_DBD_B_like 242 347 - -
Trre10g04274 653 PANTHER OS03G0429900 PROTEIN 152 600 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g04274 653 CDD RPA1_DBD_A_like 124 209 - -
Trre10g04274 653 Pfam Domain of unknown function DUF223 145 240 IPR003871 -
Trre10g04274 653 SUPERFAMILY Nucleic acid-binding proteins 222 354 IPR012340 -
Trre10g04274 653 Gene3D - 109 211 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04274 Trre-Chr10 52210760 52214729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04274 148 493 Core DNA Replication Machinery Family AT5G08020 22.865 5.05e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04274 - - tpra:123884216 711.064