Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04269 ATGGATTCACCTCTTCAAGAAACCAAACCCACCGTCAACACCGTTGTTACTACCACTCTGAGTGAAACATCTAACAACAGTACTGATGATTCATCAAACCGTAAATGCAAGGGTAAAGGTGGACCTGATAATAACAAATTTCGATATCGTGGTGTTAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCACGTAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTTTATGGTTCTAGAGCTCAACTTAATCTTCAACCTTCTTCTTCAATTTCCAATAATTCTTCTTCTTCTTCTACCTCTTCTCGTTTAAATTCTTCTAATTCCAATAATACCCTTCGTCCTTTACTTCCTCGTCCTTCTGGTTTCTCTTTCACTTACCCTTTTTCTTTTTACAATCATTTTCATCATCATCATCATCATCAAGAAATGATGCAACTTCAACAACAACATCAACATCAATATCAATACCAATATCAATATAATCAACAACAGCTACATAATCAAGATTTTGAACATGCAAGTGGTGATTCTGTTAGATCAGTTACCTCGTACCAGAATAATCATGTTCATGGTACTAAATATGCTGATGAAGATGAAGAATTGCATGCACAACATGTTTTGAATATTCAGCAACAGAACCAGGTGAATAATAATATTCAGAATTTTGTGGTTGAGGGTTCTTTGGTAGGGTCATCAAGTTTTGGTTGTTCATCTCAAAATAATAATAATAATAATATGGATGGAAATGGAACAGTGGTGGATCCAGATCCAGATTCTATGTGGCCAGCTTTGGAAAATGTGGAAGATTATACAACAACTAGTTTATGGGATTATAATGATCCTTTCTTCTTTGATTTTTGA 921 0.355 MDSPLQETKPTVNTVVTTTLSETSNNSTDDSSNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQPSSSISNNSSSSSTSSRLNSSNSNNTLRPLLPRPSGFSFTYPFSFYNHFHHHHHHQEMMQLQQQHQHQYQYQYQYNQQQLHNQDFEHASGDSVRSVTSYQNNHVHGTKYADEDEELHAQHVLNIQQQNQVNNNIQNFVVEGSLVGSSSFGCSSQNNNNNNMDGNGTVVDPDPDSMWPALENVEDYTTTSLWDYNDPFFFDF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04269 306 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Trre10g04269 306 Pfam AP2 domain 48 96 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 21 296 - -
Trre10g04269 306 FunFam Ethylene-responsive transcription factor 2 48 106 - -
Trre10g04269 306 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trre10g04269 306 MobiDBLite consensus disorder prediction 1 31 - -
Trre10g04269 306 MobiDBLite consensus disorder prediction 1 48 - -
Trre10g04269 306 MobiDBLite consensus disorder prediction 105 134 - -
Trre10g04269 306 MobiDBLite consensus disorder prediction 32 48 - -
Trre10g04269 306 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04269 Trre-Chr10 52181267 52182265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04269 32 140 AP2-EREBP Transcription Factor Family AT2G40220 76.786 6.26e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g04269 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04269 K09286 - fve:101302022 191.815