Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04268 ATGTCGAACCACAACAGCTTCAAAACATTCGACTGGACCTTCGACACAGAACCCGAAAACGAACCACTCCAAATCAAAGGCGGAAAACTCCTCTTCTTCATCGCCATCTTCACAATCATCATCCTCTTCACTTTAATCTTCCTCTGTGCTCGCTGGATCTTCCGCAACCGCGGCCTCCTCAATCCACCTCACGCGCCGTCGCACACAACCGCATTTCCTTCTCCATCACAAGGACTCGACGTCGACGCTATCAAGAAGCTTCCGATCATTTTACATCAAACAGATTATTCCAATCGCGCGTTGGAGGAAACTGAATGTTGTATCTGTTTAAGCGCGTTTAAAGATGGTGATAAGCTGAAAGTGTTGCCGAGTTGTGATCATTGTTTTCATTGTGAATGTGTTGATGTTTGGCTTGTTAATCATTCTAGCTGTCCTTTGTGTAGAGCTTCTCTTAAAATCGATTATGCGTTTCCACAGATTTTGATTCAAGAACCACCTATTAGATATAATAATAATAATAGTGTTCCACTTTAA 534 0.427 MSNHNSFKTFDWTFDTEPENEPLQIKGGKLLFFIAIFTIIILFTLIFLCARWIFRNRGLLNPPHAPSHTTAFPSPSQGLDVDAIKKLPIILHQTDYSNRALEETECCICLSAFKDGDKLKVLPSCDHCFHCECVDVWLVNHSSCPLCRASLKIDYAFPQILIQEPPIRYNNNNSVPL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04268 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 154 - -
Trre10g04268 177 FunFam RING-H2 finger protein ATL66 71 153 - -
Trre10g04268 177 SMART ring_2 106 147 IPR001841 -
Trre10g04268 177 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre10g04268 177 CDD RING-H2_EL5-like 105 148 - -
Trre10g04268 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Trre10g04268 177 Pfam Ring finger domain 105 148 IPR001841 -
Trre10g04268 177 SUPERFAMILY RING/U-box 96 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04268 Trre-Chr10 52163459 52163992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04268 15 154 C3H Transcription Factor Family AT3G11110 40.559 5.34e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04268 - - gmx:100794554 183.726