Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04265 ATGAGTCAGTTAGATAAAGATGTTTTCAACTTGATTAAGGTTCAGTACGCGATGATTAGCGCAAACTCAAATTCCAATTCCAATGGCGGTGGTGGTGTTGATGAAAACGGCGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGATGAAACATTGGTGAAATTGGTAAAAGAATACGGTGCAAGAAACTGGTCTGTCATAAGCAACGGAATCCCTGGTCGTTCTGGAAAATCATGCCGTCTCCGGTGGTGTAATCAGCTGAGTCCTGACGTTCAACACCGTCCTTTTACTCCGGCGGAAGATAACATCATAATTCAAGCGCACGCAGTTCATGGAAACAAATGGGCGACGATTTCACGTCTTTTACCAGGTAGAACTGATAACGCGATTAAAAACCACTGGAATTCAACTCTCCGCCGTCGTCGTACGGAGGCGCCGGTGAATTCGAATCAGATAATGCCGGTGATTTCCTCCGCCGTGAGTATCGGAAAACGTGCGCCAAATATGTATGACGGTTATAATAACGGTTTGTTGGATCTCGGTTACGGTTGTAAACGGCAATGTGTTGAGAATAATAACGGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGATGCGGGTAATGGTGTTACTGTTATGACGTCGTTAAGTTTGTTTCCACCTGGTGAGAAATTGATGAAAGAAGAAAAAGAGAAAAAAGAAAAGGAACGAGATTTTGATTTTGATGATAATTTGAAGTTACTGGGAAACGATAATTTGAGGTCCATTATTCAGCGTATGATAGCAGAAGAAGTTAGGAATTATGTTGATAACATGCACCTTGATGGATTTCAACTTGGAACTCCCGATTCAAGAAAGTGA 867 0.4221 MSQLDKDVFNLIKVQYAMISANSNSNSNGGGGVDENGDKVKGSWSPQEDETLVKLVKEYGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTEAPVNSNQIMPVISSAVSIGKRAPNMYDGYNNGLLDLGYGCKRQCVENNNGSRDGEETVTEEEDAGNGVTVMTSLSLFPPGEKLMKEEKEKKEKERDFDFDDNLKLLGNDNLRSIIQRMIAEEVRNYVDNMHLDGFQLGTPDSRK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04265 288 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Trre10g04265 288 CDD SANT 43 85 IPR001005 -
Trre10g04265 288 Gene3D - 95 141 - -
Trre10g04265 288 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Trre10g04265 288 Pfam Myb-like DNA-binding domain 95 137 IPR001005 -
Trre10g04265 288 FunFam MYB transcription factor 41 92 - -
Trre10g04265 288 Gene3D - 40 92 - -
Trre10g04265 288 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Trre10g04265 288 SMART sant 40 89 IPR001005 -
Trre10g04265 288 SMART sant 92 140 IPR001005 -
Trre10g04265 288 PANTHER MYB PROTEIN-RELATED 41 204 - -
Trre10g04265 288 MobiDBLite consensus disorder prediction 23 47 - -
Trre10g04265 288 CDD SANT 95 138 IPR001005 -
Trre10g04265 288 FunFam Transcription factor MYB44 95 141 - -
Trre10g04265 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Trre10g04265 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 87 IPR017930 -
Trre10g04265 288 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04265 Trre-Chr10 52144175 52145570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04265 37 141 MYB Transcription Factor Family AT3G50060 70.476 2.46e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04265 Myb_DNA-binding 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04265 - - cam:101514420 345.125