Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04256 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCATCAGATTACAACATGGAGGGTAAGCTTCAGAAGGGTATCCACAACTCCTCAATTTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATCGGATCGAAGAAGATGGAATCCGAAAAGAGGACTCCCCTCATGATTGCTTCCTTGTTTGGAAGCACTAAGGTGCTTAAGTATATTGTTTTGACAGGAAAGGTTGATGTCAACCGAGTTTGTGGCTCCGATATGGTCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAATTTTCGCTTGAGGTTGTCAAGCTCTTGCTTGATGCTGGGGCAGATGCTGATTGTCTTGATGCTAATGGTAACAAACCGGTTGATCTGATTGCGCCTGCTTTTAATACTTCGTCCAAATCGCGTAGGAAGGTGTTGGAGATGTTTTTGAGAGGTGAGGTTAGTGCTGAACTCGTCCAAGGGGAGATGGATGCTTCTTTCTCATTGAAGAAAGATGGTGGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCGGACATAAACAACGGTGTATATGGATCAGATGACTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCAGGTGAGAACGCAAGGAGAAGAGACCCAAAGAAATATCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGATCCTGCCAGAAAGGGGATTCTTGCGAGTATGCGCACGGTGTTTTCGAGTCATGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAAGATGAGACTGGCTGCAACAGGAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGTTGCGCCCCGTGTATGCTTCTACCGGATCAGCTATGCCTTCACCAAAGTCATATTCAGCTAGTGCAATGGACATGACATCGATGAGTCCGCTGTCTCTTAGCTCCTCATCTTTGCCTATGTCGACCGTTTCAACACCGCCCATGTCGCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATTAACCTCACTCCACCATCATTGCAGCTCCCAGGTAGCCGGTTGAAGAGCGCCTTGAGTGCCAGGGATATGGATCTTGAGATGGAACTGCTCGGTCTTGACAGTCCCCGTCGTCAACAGCAACAGCAGCTTCAACAACAACAATTGATTGAAGAGATTGCCAGAATCTCTTCCCCATCTTTCCGGAACAACGAATTCAACAGGATTGCTGATTTGAATCCAACTAACCTTGATGACCTATTAGCATCTGCTGATCCTAATTTACTCTCTCAACTACATGGACTCTCCATGCAGCCTTCAACACCCACCCAACAGATGCAATCTCCAAGTGCGATGCAGATGCGCCAAAACATGAACATGAACATGAGCCAAAATATGAACATGAACCACCTTCGCGCAAGTTATCCATCCAATAATATGCCATCCTCTCCAGTGAGGAAACCCTCAGCATATGGATTTGATTCATCAGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCTTCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGCGGTGCTGCAAACCACCATCACGGACTGTCTTCGCCTTCCAGCAGGATGTCCTCTGGCCTTCCAGACTGGGGCTCCCCCACCGGAAAACTCGATTGGGGTGTAAATGGAGATGATCTTAACAAGCTGAGAAAATCTGCTTCTTTCGGGTTCAGAAATAACGCGGCAACACCAACTCCATCCCAACATGCTGAGCCGGATGTCTCTTGGGTTAACTCATTGGTTAAGGATGTTCCCTCCGAGAATTCCGATATGCGGCAGCTGCAGCAATATGATCTGAGTAGAGAGATGCTTCCACCATGGGTGGAACAGATGTACATAGAGCAAGAGCAGATGGTAGCATGA 2037 0.4669 MCSGSKSKLSSSDYNMEGKLQKGIHNSSILLELSASDDFDAFKREVDEKGLDVNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTKVLKYIVLTGKVDVNRVCGSDMVTALHCAVAGGSEFSLEVVKLLLDAGADADCLDANGNKPVDLIAPAFNTSSKSRRKVLEMFLRGEVSAELVQGEMDASFSLKKDGGDKKEYPIDISLPDINNGVYGSDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNLWQNKINLTPPSLQLPGSRLKSALSARDMDLEMELLGLDSPRRQQQQQLQQQQLIEEIARISSPSFRNNEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPSAMQMRQNMNMNMSQNMNMNHLRASYPSNNMPSSPVRKPSAYGFDSSAAVAAAVMNSRSSAFAKQRSQSFIDRGAANHHHGLSSPSSRMSSGLPDWGSPTGKLDWGVNGDDLNKLRKSASFGFRNNAATPTPSQHAEPDVSWVNSLVKDVPSENSDMRQLQQYDLSREMLPPWVEQMYIEQEQMVA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04256 678 Gene3D - 258 320 - -
Trre10g04256 678 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Trre10g04256 678 PANTHER UNKEMPT FAMILY MEMBER 32 642 IPR045234 -
Trre10g04256 678 FunFam Zinc finger CCCH domain-containing protein 66 215 283 - -
Trre10g04256 678 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Trre10g04256 678 MobiDBLite consensus disorder prediction 568 587 - -
Trre10g04256 678 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Trre10g04256 678 MobiDBLite consensus disorder prediction 572 586 - -
Trre10g04256 678 MobiDBLite consensus disorder prediction 346 386 - -
Trre10g04256 678 Pfam Ankyrin repeats (3 copies) 70 138 IPR002110 GO:0005515
Trre10g04256 678 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Trre10g04256 678 Gene3D - 25 173 IPR036770 -
Trre10g04256 678 SUPERFAMILY Ankyrin repeat 24 161 IPR036770 -
Trre10g04256 678 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Trre10g04256 678 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Trre10g04256 678 SMART ANK_2a 107 139 IPR002110 GO:0005515
Trre10g04256 678 SMART ANK_2a 72 102 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04256 Trre-Chr10 52044279 52046315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04256 25 673 C2H2 Transcription Factor Family AT5G12850 38.828 1.32e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre10g04256 Ank_2 9.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04256 - - gmx:100783376 966.837