Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04254 ATGGCTTTTTCCAACAACGTAGAAGCAATTTTACAATTTCTAAGAAAAAATGGATTATCAGAAGCAGAATCTGCTCTCAGACAAGACATCATTGAAAAGAACAACACTGGTTCTGATTTTGATGTTGATTTTGATGTTGATGTTGCTTCCTTTGACTATGAGAAATTCTTCTTTCCTATGGTTCCTCCTCCTCCTAAAGTTAGAGTCCGATCATTTTCACGGCTGCCGGAGTTTGTCTCCGGCGATGGTCAATTCTTCAAATCGAACTCTGTTTCTTCTGAAGAACAGTTTGTTAGCATCGCTTCTTCTACTTCTCGTTCTCGTGTTTCTTCTTCAGAATTCATCAATCCATATGGAATCAATTCATCATCTCAGACTTTGAATGATTCTGAATCTTCATCTGATAGATTGTCACAATTCGGCACAGCGCGTGATTATCACGATTTCGATATGCAACATGAACCGTATTGGTATAATGAAAATGATGATGATGATTTCATGACTCCTGATTTTGAAGGACCGGATTTCTTTGCGTGTCAAAGTGAAGATAAGTTCGTTACTGAAAATCAATTTGAAAATTCCGTGGATCTTGTTTACAACTACGAAGAAATTCGATTAGAGGGAAATGAGGGTTACATGGACAAGCCGATGAAAAGTGATGTAAATGTGAATTATTTGAAAGATTACTGTCACGAGGTTGAGAAAGATGGTGTTGCGCATAATTGTGAAGTTCCGTTTTGCAAAAGCAGTCCGGTTTCAGGAGGTTCTTGTAGTGGAGATCCGACAAACTTTAGCTACCCTAATTTGAAGGAAATTGATCTTAATGATTTTCATCTGAAGGATATTATTAAGTCTTTCGATTCTGTTCCGTTGCTTACCGTGAAGCAAAGTTTCGATTGCTACTCAAAAAATGATAGTGGTGAGAGGTACAAGGATCCCTATGACTTAACTATCGATGTTGATGAAACAAATCTACCAAATGGGATCAACGCCTATGAAGTAAGCGATGGTCGAGAGTTGAGTGAAGAATTACATGTTCCGGAGGTTGCTACAGATGGAGAGGATAATAATAACAATACTGATGATGAGCTCTTAAAATACATTCAAGACGATGAATACGAAGTATTTGAGCTAAGAATTGTTCATAGAAAGAACAGGACTGGATTTGAAGAAAACAAAGAAGTGCCAATTGTGATAAATTCAGTCATGGCGGGCAGGTACTACATAACAGAATATCTCGGCTCGGCTGCCTTTAGTAGGGTTGTTCAAGCACACGATCTTCAGATGGGAATCGATGTTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTGATCAAAGTTTAGATGAAATCAAGCTTCTGAAACTAGTCAATAAGCACGACCCCGGAGATAAACACCACATTTTGCGTCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTGACCGAACTTTTGCGTGCAAACTTGTACGAATTTCAAAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTACATAGACTGCAGCTCATTACTCGACAATGTTTGGAGGCATTGCAATATTTGCATAACTTGGGAATTGTTCACTGTGATCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAAATGTGAAGTAAAGATTATTGATCTTGGAAGCAGTTGCTTTAAAACAGATAATCTATGCCTATATGTTCAATCCCGATCCTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCGCTCGGCTGTATTTTGGCTGAGCTATGCTCCGGTGAAGTGCTGTTTCCAAATGACTCAGTTGTGATGATTCTCGCGCGCATGATTGGAATGTTTGGTCCTTTTGATATGGAGATGTTGGTGAAAGGGCAGGAAACACACAAGTACTTCACCAAAGAATATGATATTTACTTTGTGAATGAGGAGACAGATCAACTAGAGTACTTAATTCCAGAAGAATCATCATTGGAGCAGCACCTACAGATCACCGATATTATGTTTATTGACTTCGTCAGTTACTTGCTTAACGTCAACCCTAAAAGAAGACCTACTGCAAGACAGGCACTAAAACATCCATGGCTTTCCTATGATTACAAGTCCATGTAA 2151 0.3798 MAFSNNVEAILQFLRKNGLSEAESALRQDIIEKNNTGSDFDVDFDVDVASFDYEKFFFPMVPPPPKVRVRSFSRLPEFVSGDGQFFKSNSVSSEEQFVSIASSTSRSRVSSSEFINPYGINSSSQTLNDSESSSDRLSQFGTARDYHDFDMQHEPYWYNENDDDDFMTPDFEGPDFFACQSEDKFVTENQFENSVDLVYNYEEIRLEGNEGYMDKPMKSDVNVNYLKDYCHEVEKDGVAHNCEVPFCKSSPVSGGSCSGDPTNFSYPNLKEIDLNDFHLKDIIKSFDSVPLLTVKQSFDCYSKNDSGERYKDPYDLTIDVDETNLPNGINAYEVSDGRELSEELHVPEVATDGEDNNNNTDDELLKYIQDDEYEVFELRIVHRKNRTGFEENKEVPIVINSVMAGRYYITEYLGSAAFSRVVQAHDLQMGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPGDKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLHRLQLITRQCLEALQYLHNLGIVHCDLKPENILIKSYKKCEVKIIDLGSSCFKTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDSVVMILARMIGMFGPFDMEMLVKGQETHKYFTKEYDIYFVNEETDQLEYLIPEESSLEQHLQITDIMFIDFVSYLLNVNPKRRPTARQALKHPWLSYDYKSM 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04254 716 SMART serkin_6 407 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04254 716 SUPERFAMILY Protein kinase-like (PK-like) 396 711 IPR011009 -
Trre10g04254 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Trre10g04254 716 FunFam Putative serine/threonine-protein kinase dyrk2 401 488 - -
Trre10g04254 716 ProSiteProfiles Protein kinase domain profile. 407 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04254 716 PANTHER DUAL SPECIFICITY PROTEIN KINASE 128 710 - -
Trre10g04254 716 Gene3D Transferase(Phosphotransferase) domain 1 461 709 - -
Trre10g04254 716 Coils Coil 716 716 - -
Trre10g04254 716 CDD PKc_DYRK_like 407 709 - -
Trre10g04254 716 FunFam Serine/threonine-protein kinase ppk15 486 710 - -
Trre10g04254 716 Gene3D Phosphorylase Kinase; domain 1 401 488 - -
Trre10g04254 716 Pfam Protein kinase domain 409 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04254 Trre-Chr10 51990180 51993719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04254 404 704 MAP Kinase Gene Family AT5G19010 31.790 2.01e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Trre10g04254 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04254 - - gmx:100783988 1049.65