Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04251 ATGAAGACCAATTCACTCTCTTCCGTCGTCTTTTCCACTTTCACCGTCATTTTTCTCCTTTTTTCAACACCTTTTTCCAATGCTCTCGGCTCCGGCACCACCCTCGCCGTCGTCGACTCCACCGGAACAGTCTGTGGAATTGTATCAGAAGAAAAGACTCAAAACATTGTTTGCTACCGCCACGGGAAAATAATCTCCGTCGTGCCGGAAGTCTCATTCTCCTCAATCTCCGGCGGAAAAAACTACTTCTGCGGTATTAGGTCCGGTAACTACAGTATCCTCTGTTGGGACACTGTTTCATCAAACACAACGTTTGAAAAAAGAAGACTTTACAACAATGGCACTGTTTTGTATGAAAATCTCGCCGTCGGAGATTCCCATGTTTGTGCCACGGTGGTCGGAGTTGGAACTGTTTCTTGTTGGAGAATCAATAAAGATTTTATTTTGCCATCTGGGTATGATCAATTTTCATCAATAACTTCTGGGTTTGGATTCTCTTGTGGAATTTTGAAGAAAAATGTTTCTGGGTCTGTTCGTTGTTTTGGGAATGTGAATGAATCTTCCATTGCTGAAAAGATAGAAAAAGAGTTTATGAATATTTCTATGGTGAGTCTTGTAGCTGGTGAGTCACATGTTTGTGGATTAAATTCAAAAGGGTTTTTAGTTTGTAAAGGAAGTAACAATTTTGGTCAAATTAATGTTCCTAATCAAGTTAAGCCTTTGGAATATTCTGATTTAGCATTAGGATCTGAACATAGTTGTGCTATTAGAAGATCTAATGGTTCTGTTGTTTGTTGGGGTGGTAAAGGATTGTTTAATGTTAATGTTACAAAAAGTGTTTCTTTTGAGAGTATTGTTTCTGGTTCAAATTTCATCTGTGGATTAACAACTAACAATTTTTCTGTTATTTGTTGGGGTCCTGGTTGGTTTGATAATGGTGGTTCAGTTTTTGAGCTTCATTTGCCACCTATTCTACCTGGGATTTGTGTTCAATCTTCTTGTGGTGAATGTGGTATATATCCTCAATCTCAGTTTTTGTGTTCTGGTTTTGGTAACATTTGTAAGCCAAAACCTTGTTGGCCTCAAATGGACGAAGTTCCGGTGCCGCCAACGATACAACCGTCGCCGAATTTGGTGATGCCGGTTTCTAGGTCAAAGACATTGACAAAGGGGTTATTGGTGTTTGCTATTGTTGGATCAATTGGAGCTGTTGCTGGTTTTTGTACTGTGGTTTATTGTTTGTGGAATGGTGTGTGTTTTGGTAAGAAGAAAGTTCATAATTCAGTTCAACCAACAATTACTAGAGGTGGAAGTTTCAATTGCGGCGCTTTTTCGAATCATAGTCCGCTTTCGAGGTCATCCACGATTAAGCGTCAGAGTTCGAGGATAATGAAGCGTCAGAGAAGCGGAACCTCGTCGACAAAACATCCGGATAGGTCAGAGGACTTCACTTTTGCCGAGCTTGCTGCAGCTACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTATGGTGTAGTTTACAAAGGTAAACTTGCCGATGGCCGTGAGGTAGCGATCAAAAGGGGTGAAACTAGTACTAAGATGAAGGTTTTTCAAGAGAAAGAGAGTGCATTCGAGTCCGAATTAGCCTTCTTGTCGCGTCTACACCACAAGCATTTAGTTAGGCTAGTCGGTTTCTGTGACGAGAAAGATGAAAGGCTTTTGGTGTATGAGTTCATGAAGAATGGTGCATTGTATGATCATTTGCACGACAAGAACAACGTCGATAAGAATAGTAGTTTATTGAATTCTTGGAAAATGAGGATCAAAATCGCGTTGGATGCTTCACGAGGAATCGAGTATCTCCACAATTACGCAGTTCCATCGATAATTCATCGCGACATAAAGTCTTCAAACATTCTCATTGACGCGGATTGGACAGCAAGAGTCTCCGATTTCGGATTGTCAATGATGAGTCCGGATTCGGATCACGATTACCAACCAACAAAAGCTGCAGGAACGGTCGGATACATTGATCCCGAATACTACGGTCTAAATGTATTAACAGCAAAAAGTGATGTCTATGGTCTTGGAGTAGTTTTACTAGAACTATTAACAGGAAAAAGAGCTATATTCAAGAATGATGAAAATGGAGGAACACCAATGAGTATAGTAGATTTTGCAGTGCCTATAATTATGAAAGGAGAATTGATAAATTTTTTGGATCAAAGGGTTGAAAAACCAGAAATGAATGAAACAGAAGCAGTTGAATTGGTAGCATATACTGCTATGCATTGTGTGCATTTAGAAGGAAAAGATAGACCAACAATTTCTGATATTGTGGCTAATTTAGAACGTGCTTTTACTCTTTGTGATAGTAGTAGTCATGGTAGCATTTCTAGTGCTACAATCTCTATTGAATCTGACTGA 2418 0.3978 MKTNSLSSVVFSTFTVIFLLFSTPFSNALGSGTTLAVVDSTGTVCGIVSEEKTQNIVCYRHGKIISVVPEVSFSSISGGKNYFCGIRSGNYSILCWDTVSSNTTFEKRRLYNNGTVLYENLAVGDSHVCATVVGVGTVSCWRINKDFILPSGYDQFSSITSGFGFSCGILKKNVSGSVRCFGNVNESSIAEKIEKEFMNISMVSLVAGESHVCGLNSKGFLVCKGSNNFGQINVPNQVKPLEYSDLALGSEHSCAIRRSNGSVVCWGGKGLFNVNVTKSVSFESIVSGSNFICGLTTNNFSVICWGPGWFDNGGSVFELHLPPILPGICVQSSCGECGIYPQSQFLCSGFGNICKPKPCWPQMDEVPVPPTIQPSPNLVMPVSRSKTLTKGLLVFAIVGSIGAVAGFCTVVYCLWNGVCFGKKKVHNSVQPTITRGGSFNCGAFSNHSPLSRSSTIKRQSSRIMKRQRSGTSSTKHPDRSEDFTFAELAAATNNFSLENKIGAGSYGVVYKGKLADGREVAIKRGETSTKMKVFQEKESAFESELAFLSRLHHKHLVRLVGFCDEKDERLLVYEFMKNGALYDHLHDKNNVDKNSSLLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDADWTARVSDFGLSMMSPDSDHDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPMSIVDFAVPIIMKGELINFLDQRVEKPEMNETEAVELVAYTAMHCVHLEGKDRPTISDIVANLERAFTLCDSSSHGSISSATISIESD 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04251 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Trre10g04251 805 Pfam Protein kinase domain 496 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04251 805 FunFam Serine/threonine-protein kinase-like protein CCR4 576 798 - -
Trre10g04251 805 ProSiteProfiles Protein kinase domain profile. 495 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04251 805 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Trre10g04251 805 SMART serkin_6 495 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04251 805 Gene3D Phosphorylase Kinase; domain 1 454 575 - -
Trre10g04251 805 Gene3D Transferase(Phosphotransferase) domain 1 576 794 - -
Trre10g04251 805 FunFam serine/threonine-protein kinase-like protein CCR1 464 575 - -
Trre10g04251 805 MobiDBLite consensus disorder prediction 447 479 - -
Trre10g04251 805 SUPERFAMILY RCC1/BLIP-II 64 306 IPR009091 -
Trre10g04251 805 SUPERFAMILY Protein kinase-like (PK-like) 472 780 IPR011009 -
Trre10g04251 805 Gene3D - 197 318 IPR009091 -
Trre10g04251 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 199 791 IPR044815 GO:0004674
Trre10g04251 805 Gene3D - 24 196 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04251 Trre-Chr10 51961877 51964294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04251 1 805 Receptor kinase-like Gene Family AT3G55950 58.384 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre10g04251 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04251 - - gmx:100798905 1197.19