Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04246 ATGACCGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGCGGTGGCACTAATCCGGGGCAGATAAAAATATTTTCTGGGGGAATTTTATGGAAAAGACAGGGGGGTGGTAAATCAATTGAAGTTGACAAAGCTGACATAGTGAGCGTGACATGGATGAAAGTTCCAAGGAGTAATCAACTTGGTGTTCAGATCAAAGATGGTTTGTTCTACAAATTCACTGGATTTCGTGATCAGGATGTTTTAAGTTTGACCAATTTTTTCCAAAACACCTTTGGAATAGCTGTAAAGGAGAAGCAACTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATTTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTTCCTTTAGCGGATGTCTCGCAAACAAACCTTCAAGGGAAAAATGATGTGATATTGGAGTTCCATGTGGATGACACAACTGGAGCCAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAAAATACCCCCCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACGCCAAGGGGACGATATAGTGTCGAGTTACACCTGTCATTCCTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATCCAGTATAGCAGTGTGGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTCGTCGTTATCAGCCTTGATCCACCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTGGTTGAAAGTGAATTGGCATTAAGTGAAGATCTTTATAACTCTAAGTACAAAGACAAGTTGGAGCTGTCTTATAAGGGGCTCATCCATGAAGTGTTCACCACAATATTACGTGGGTTGTCTGGGGCCAAAGTTACCAAGCCTGGTAAATTTAGGAGTTGTCAAGATGGTTATGCCGTGAAATCATCTCTGAAAGCTGAGGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCTACCCTTATTACACACGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGACCAAGAGCATCTCTTCCGTAATATTCAAAGAAATGAGTACCACAATTTGTACGGTTTCATCAGTTCAAAGGGCTTGAAAATGATGAATTTAGGAGATGCCCAAGCAACTGCCGGTGTTGCTAAGGTTCTTGAGAATGAAGATGACGACGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCCGAAAAGGATGATGAAGGGTCTCCTACTGACGATTCTGGGGCAGATGATTCTGATGCTAGTCAAATTGGTGATGAGATAGAGAAGCCTGCCAAAAAGGAGCCAAAGAAGGATCTTCCTTCTAACTCGAAGGCATCTTCTTCTAAGAAGAAATCAAAAGATGCCGATGAAGATGGAAAGAAGAGAAAACCGAAGAAGAAAAAGGATCCAAATGCACCCAAGCGGGCATTGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGGAGTGTTTTATATGTAATAAATACAAGTGTTGTGATTTTGGATTTGGGTGTAATCTAAAGAAAACTAATCCTGGGATTTCATTTACGGATGTTGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCTGAGGAGAAGGAGCCATATGAGGCAAAAGCCCGTGTTGATAAAATACGTTACAAGGATGAGATTAGTGGCTACAAGAATCAACAAGCACAACCACAACCAATGAATATTGATTCAGGAAATGAATCCGACAGTGCCTAG 1995 0.412 MTDGHLFNNITLGGRGGTNPGQIKIFSGGILWKRQGGGKSIEVDKADIVSVTWMKVPRSNQLGVQIKDGLFYKFTGFRDQDVLSLTNFFQNTFGIAVKEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENTPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKMMNLGDAQATAGVAKVLENEDDDAVDPHLERIRNEAGEDESDEEDSDFVAEKDDEGSPTDDSGADDSDASQIGDEIEKPAKKEPKKDLPSNSKASSSKKKSKDADEDGKKRKPKKKKDPNAPKRALSGFMFFSQMEREECFICNKYKCCDFGFGCNLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARVDKIRYKDEISGYKNQQAQPQPMNIDSGNESDSA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Trre10g04246 664 SMART Rtt106_2 348 441 IPR013719 -
Trre10g04246 664 SMART hmgende2 558 645 IPR009071 -
Trre10g04246 664 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 559 644 IPR009071 -
Trre10g04246 664 MobiDBLite consensus disorder prediction 640 664 - -
Trre10g04246 664 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 629 - -
Trre10g04246 664 Gene3D - 95 179 IPR038167 -
Trre10g04246 664 MobiDBLite consensus disorder prediction 508 550 - -
Trre10g04246 664 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Trre10g04246 664 MobiDBLite consensus disorder prediction 642 664 - -
Trre10g04246 664 SUPERFAMILY HMG-box 546 648 IPR036910 -
Trre10g04246 664 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Trre10g04246 664 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Trre10g04246 664 FunFam Fact complex subunit ssrp1 199 338 - -
Trre10g04246 664 MobiDBLite consensus disorder prediction 469 560 - -
Trre10g04246 664 FunFam FACT complex subunit SSRP1 96 179 - -
Trre10g04246 664 Gene3D - 1 93 IPR011993 -
Trre10g04246 664 CDD PH2_SSRP1-like 342 441 - -
Trre10g04246 664 FunFam FACT complex subunit SSRP1 1 93 - -
Trre10g04246 664 Gene3D High mobility group box domain 542 656 IPR036910 -
Trre10g04246 664 FunFam FACT complex subunit SSRP1 339 448 - -
Trre10g04246 664 Pfam HMG (high mobility group) box 593 644 IPR009071 -
Trre10g04246 664 SUPERFAMILY PH domain-like 206 440 - -
Trre10g04246 664 Gene3D - 199 338 - -
Trre10g04246 664 Gene3D - 339 448 IPR011993 -
Trre10g04246 664 MobiDBLite consensus disorder prediction 474 488 - -
Trre10g04246 664 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04246 Trre-Chr10 51917732 51923120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre10g04246 POB3_N 4.7e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04246 K09272 - gmx:100805034 1117.45