Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04231 ATGGCACCAAAACCAACCAAAGCTGAAAAGAAGCAGAACTATGATACCAAACTGTGCCAGCTTCTAGATGAATTTACTCAGATTCTTGTTGTTAATGCTGATAATGTTGGATCTAACCAACTTCAGAGTATTCGAAGAGGTCTTCGTGGTGATTCCGTTGTTCTTATGGGGAAGAACACTATGATGAAAAGATCTGTTAGGATGCACGCTGAGAAGACTGGAAACAATGCTTTCCTTAACCTTATTCCTCTCCTTGTTGGAAATGTTGGGTTAATTTTCACCAAGGGTGACTTGAAGGAAGTCAGTGAGGAAGTTGCTAAGTACAAGGTTGGAGCTCCGGCTCGTGTCGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTCGACCCCTCCCAGACCTCTTTCTTCCAGGTGCTTAACATCCCAACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTTATCAAGAAGGGAGACAAGGTTGGATCTTCTGAGGCTGCATTGCTTGCCAAGCTAGCCATCCGACCCTTCTCATATGGGCTTGTGGTCCTTTCTGTCTATGATAATGGTTCTGTGTTCAGCCCTGAGGTTCTTGATCTTACAGAGGATGACCTTGTTGCGAAGTTCGCTATTGGTGTTTCAATGGTTACTTCACTTTCTTTGGCCATCTCCTACCCAACACTTGCAGCTGCACCTCACATGTTCGTCAACGCCTACAAGAATGTTCTCGCCGTTGCAGTGGCAACTGAATATTCTTTCCCTGAGGCTGACAAGGTTAAGGAGTACTTGAAGGACCCAAGTAAGTTTGCTGTAGCCGCTGTTGCTGCCCCGGCTGCCGCTTCTGGTGGTGCCCCTCCTGCAGCCAAGGAAGAGGAGAAGAAGCCTGAGCCTGAAGAAGAATCCGATGAAGAAATGGGTTTTGGTCTATTTGATGATTAG 966 0.4627 MAPKPTKAEKKQNYDTKLCQLLDEFTQILVVNADNVGSNQLQSIRRGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLAIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVATEYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGGAPPAAKEEEKKPEPEEESDEEMGFGLFDD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04231 321 CDD Ribosomal_P0_L10e 9 185 - -
Trre10g04231 321 MobiDBLite consensus disorder prediction 287 321 - -
Trre10g04231 321 PIRSF L10E 1 320 IPR030670 GO:0042254
Trre10g04231 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 301 - -
Trre10g04231 321 Gene3D - 114 185 IPR043164 -
Trre10g04231 321 MobiDBLite consensus disorder prediction 305 321 - -
Trre10g04231 321 Pfam 60s Acidic ribosomal protein 234 319 - -
Trre10g04231 321 Gene3D - 6 209 IPR043141 -
Trre10g04231 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
Trre10g04231 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Trre10g04231 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Trre10g04231 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04231 Trre-Chr10 51764754 51766840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04231 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.445 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04231 K02941 - gmx:547816 520.776