Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04229 ATGGCTCTACAGCAACCAAGCCGTGTGAATCCAAAAATTTGGCAAAGTGTTGCCGGCATCAAAATTCCAAAACTAGGCTCCAAAGTTTACTATTTTCCACTTGGGCACTTAGAACATGCAAACCCTACCCCAAACATTGAATCAATTTCACTTATCAATAGTTACCGTCCATTCATTCCATGTATCATCTCATCCGTTGATCTCCTCGCCGATCCTAAGACCGACGAGGTCTTCACCAAACTGCTTCTAACTCCCGTCATTGACGGTAGTACAGTTGAACCTCCTCCTGAGGTTCATGATAAGGATGGAGGTGGTAATGTTGTTTATTTGGGAAAGACTCTCAGTCAATCTGATGCTAATAACGGTGGTGCATTCTCCTTACCAACCGAATGTGCCAAGATGATATTCCCTCCGCTTGATTTGAAAGAAGAATTGCCAATTCAGGAACTCTCCATCACCGATATTCACGGTGCTATATGGGAGTTTCGTCATGTCTACCGTGGGAATCCAAAGCGAAACATGTTCACCCATAACTGGAGTCGGTTTGTTGACAAGAAGAAACTCGTCGGTGGTGATTCCCTTGTTTTTATGAAAAATTCCGCCGGAAATATCTATGTTGGAATCCGTCGGGTAAAAAAGTTTGCTTCCGCCGCTGTAGTGCAAAAGAAAGAATTGGTGGCTATGGAGGCAGCGAAATTGGCGGAAAAGAACGAGGCATTTGAAGTTGTTTACTATCCGACGGCCGGTGATAATTTTGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAACAATGATCTTGAATCTACAATAAAGCTACAACATGGGATAATCACTAATATTTCTGCTCATTCTAATCGTCCATGGCGCATGCTTCAGGTTAAATGGGATGAAACTAAAGACTCGGAAAATACAACACAAGTCAGTCCTTGGCAGATTGAATATAATTCCAAAATACCTTCATTGCATCGACGATCTCCCCCAACAAAAAAGCTTAAAGTTGCTCAAGATTCTGCTTTACCAAGTGATATACAAAGAGATTCCTCCATTCCAATGATAGAGTTCCAACATTCACCAAAGGAAAAAGACCACCTGAAAGATACAATTGAGAATAATGGATTAATGAATCCATCAACAACGTTAAATTGTGATACTTTACGGGGAGTCAGGCAAAATACTTTTTCGACAACAAAAGTTATCGATGCAAACAACTGCAATGCCGAAAAAGTTACTCGTTCAATTAAGATATTTGGTGCTACCATACAAGTTGAAAGTGATTTGCCCTGA 1329 0.4093 MALQQPSRVNPKIWQSVAGIKIPKLGSKVYYFPLGHLEHANPTPNIESISLINSYRPFIPCIISSVDLLADPKTDEVFTKLLLTPVIDGSTVEPPPEVHDKDGGGNVVYLGKTLSQSDANNGGAFSLPTECAKMIFPPLDLKEELPIQELSITDIHGAIWEFRHVYRGNPKRNMFTHNWSRFVDKKKLVGGDSLVFMKNSAGNIYVGIRRVKKFASAAVVQKKELVAMEAAKLAEKNEAFEVVYYPTAGDNFVVDAKVVEDAMKINWNCGMRVKRSLNNDLESTIKLQHGIITNISAHSNRPWRMLQVKWDETKDSENTTQVSPWQIEYNSKIPSLHRRSPPTKKLKVAQDSALPSDIQRDSSIPMIEFQHSPKEKDHLKDTIENNGLMNPSTTLNCDTLRGVRQNTFSTTKVIDANNCNAEKVTRSIKIFGATIQVESDLP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04229 442 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Trre10g04229 442 CDD B3_DNA 112 210 IPR003340 GO:0003677
Trre10g04229 442 SMART B3_2 110 212 IPR003340 GO:0003677
Trre10g04229 442 Pfam B3 DNA binding domain 112 210 IPR003340 GO:0003677
Trre10g04229 442 Gene3D - 109 211 IPR015300 -
Trre10g04229 442 Pfam Auxin response factor 230 306 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre10g04229 442 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Trre10g04229 442 Gene3D - 267 335 - -
Trre10g04229 442 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 365 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04229 Trre-Chr10 51738795 51740820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04229 9 350 B3 DNA Binding Superfamily AT1G77850 38.265 7.57e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre10g04229 B3 8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04229 - - mtr:11409684 432.18