Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04228 ATGTCTCAACAACAACCTCGCCGTGTAGATCCAAAACTCTGGCAGAGTTGTGCCGGCGATTCCATCAAAATACCAAAATTACATTCAAAAGTTTACTATTTTCCATTAGGTCACTTAGAACATGCTAACCCTTCTCCAAACACTCAATCACTTTCCCTTATCAATCATTACCGTCCGTTCATTCCTTGTATCATCTCGACCGTTGATCTCCTTGCTGATCCACACACCGATGAAGTCTTCGCCAAATTGCTACTTACTCCTATAACTGAAGGCACCATTGAACCTCCTGACGTTCTTCATGAAGATCAAGAAAACAACGATAAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATGCTTGTAACGGTGGTGCATTCTCCGTACTTCGTGAGTGCGCTGACAAGATCTTCCCGCCCCTTGATTTAAATGCCAAACCGGCACCGGTTCAACAACTTTTCTTTACCGATGTTCACGGTGAAGAGTGGAAGTTTCGTCACATATTCAGTGGGTATCCCCTGCGAAACCTAATCACTACCGGCTGGAGTAAGTTTGTGGACAAGAAGAAACTCGTTGTTGGCGATTCTTTAGTTTTCGTAAAAAATTCAGCCGGAAGGATCTTCGTAGGAATTCGCAGGAAGTTTGATGCCTCAAGAAGCGGGAAAATAAAGGAGAAAGCGGTCATGGAGGCCGTAGAATTGGCAGAGAAGAACAAGGCGTTTGAAGTTGTTTACTATCCGACGGTTGGTGATTGTGATAATTTCGTGGTGGATGCTAAGGTTGTGGAGAATGCAATGAAGATTAATTGGAATTGTGGAATGAGAATTAAACGCTATTTGAAGAATGACGATTCTTCAAAGCGAACATTGTTTGGGACAATCTCTAATCTCTATGCTCCTTCTAATCGTCCATGGCGCATGCTTCAGGTTAAATGGGATGAACATAAAGTTTTGGAAAATACAACACGAGTCAATCCTTGGAGGGTTGAACCTATTTTCGACATACCTGAATTGCATCGACATTTTCCCCGAACAAAAAAGCGTAGAGTTGATCCGGGCTTTGCCTTATCAAGGAGTAAAGAGCGAGACTCTCATCCTAATGGCATTCAGGGAGCCAGGCAATATCCTTTTCCTGCATCAACTTCTTCCAACATTGTGAATGATAAGGAAAATGATTTCTTTCGGAATAAAACCGATGAATTTGCCGGTACACACAACTGCAGCACCAAAAAAGTTCGTCCCAATTCAATTAAGCTATTTGGTAAGACCATACAATTATCTGTTGGAAGCAATTTACCTGATTCTGATATCAAGGGAGATGATGGTTGTAACTTGTAA 1338 0.4215 MSQQQPRRVDPKLWQSCAGDSIKIPKLHSKVYYFPLGHLEHANPSPNTQSLSLINHYRPFIPCIISTVDLLADPHTDEVFAKLLLTPITEGTIEPPDVLHEDQENNDKVVSSFKTLTRSDACNGGAFSVLRECADKIFPPLDLNAKPAPVQQLFFTDVHGEEWKFRHIFSGYPLRNLITTGWSKFVDKKKLVVGDSLVFVKNSAGRIFVGIRRKFDASRSGKIKEKAVMEAVELAEKNKAFEVVYYPTVGDCDNFVVDAKVVENAMKINWNCGMRIKRYLKNDDSSKRTLFGTISNLYAPSNRPWRMLQVKWDEHKVLENTTRVNPWRVEPIFDIPELHRHFPRTKKRRVDPGFALSRSKERDSHPNGIQGARQYPFPASTSSNIVNDKENDFFRNKTDEFAGTHNCSTKKVRPNSIKLFGKTIQLSVGSNLPDSDIKGDDGCNL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04228 445 ProSiteProfiles B3 DNA-binding domain profile. 152 215 IPR003340 GO:0003677
Trre10g04228 445 Gene3D - 111 215 IPR015300 -
Trre10g04228 445 MobiDBLite consensus disorder prediction 349 386 - -
Trre10g04228 445 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 384 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre10g04228 445 SMART B3_2 112 215 IPR003340 GO:0003677
Trre10g04228 445 Pfam Auxin response factor 231 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre10g04228 445 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Trre10g04228 445 Gene3D - 270 335 - -
Trre10g04228 445 SUPERFAMILY DNA-binding pseudobarrel domain 107 214 IPR015300 -
Trre10g04228 445 CDD B3_DNA 113 213 IPR003340 GO:0003677
Trre10g04228 445 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04228 Trre-Chr10 51731297 51732818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04228 7 396 B3 DNA Binding Superfamily AT1G77850 38.745 4.67e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre10g04228 B3 2.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04228 - - mtr:11409684 454.136