Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04225 ATGGAAGCTAAGGAACAGGATGTGTCTTTGGGAGCAAACAAGTTCCCAGAAAGACAGCCACTTGGTATAGCAGCTCAAAGCCAAGATGAGCCAAAAGACTATCAAGAGCCACCACCGGCGCCACTTTTTGAGCCGTCTGAGCTGACTTCATGGTCTTTTTACAGAGCTGGAATAGCTGAGTTTATTGCTACTTTTCTTTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTTGTTAGATCTGATTCTAAGTGTAAGACTGTTGGGATTCAAGGTATTGCTTGGTCTTTTGGTGGTATGATCTTTGCACTTGTTTACTGTACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGTCTATTTTTGGCAAGAAAATTGTCCTTGACAAGGGCACTATTCTACATGGTGATGCAAGTGTTAGGTGCTATTTGTGGTGCTGGTGTAGTGAAAGGTTTTGAAGGTAGAAAAAGATTTGGAGATTTGAATGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGATGGTCTTGGTGCTGAAATTGTTGGCACTTTCATTCTTGTTTACACCGTTTTCTCAGCCACTGATGCTAAACGTAGCGCCAGAGATTCTCATGTTCCTATTTTGGCACCTTTGCCTATTGGATTTGCTGTGTTCTTGGTTCATTTGGCCACTATCCCAATTACCGGAACTGGTATTAACCCTGCTCGTAGTCTTGGTGCTGCAATTATCTTCAACAAGGACATTGGTTGGAATGATCACTGGATTTTCTGGGTGGGTCCATTTATTGGAGCAGCTCTAGCAGCACTCTACCACCAAGTTGTAATCAGAGCCATTCCTTTCAAGTCTAAGTAA 870 0.4287 MEAKEQDVSLGANKFPERQPLGIAAQSQDEPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFIATFLFLYITVLTVMGVVRSDSKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAICGAGVVKGFEGRKRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04225 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Trre10g04225 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Trre10g04225 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Trre10g04225 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04225 289 MobiDBLite consensus disorder prediction 1 39 - -
Trre10g04225 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Trre10g04225 289 FunFam Probable aquaporin PIP1-2 40 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04225 Trre-Chr10 51697334 51699598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04225 1 289 Major Intrinsic Protein MIP AT4G23400 84.775 4.32e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04225 K09872 - gmx:100791447 538.11