LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04224	ATGGCGGCAAGCAACCGCACAGTGTTGCAATTCTCTTCTTCACAGACCTTATCCGGAAAAATTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGACCAAGCGGAACGCGTCATCGGAACACTACTCGGTTCCGTTCTTCCCGACGGAACGGTTGATATCCGTAACTCATACGCCGTTCCTCACAACGAATCCGCCGATCAGGTTGCTTTGGATATTGAGTACCACCATAATATGTTACTATCCCACCAAAAAGTGAACCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTATCCAACCCTATACATTTGACTGTTGATACAGGATTTGCAGATGGAGAGGGCACCATTAAAGCATTTGTTTCAAATAATCTATCTCTTGGAGACCAGCAAATTGCTGCACAGTTTCAAGAAATCCCTTTGGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATAATCTGAAGTCAACTTCTGTTGATAAAATCCCATCTAATTTAGAAGGGATGGAAGCATCAATGACACATCTGTTGACCTTGATTGATGATACCTACAAATACGTTGATGATGTTGTGGAAGGGCGTGTTAATCCAGACAACAAAATTGGGAAATGTATTTCAGATGTTGTAGGTTCCCTCCCCAAAATCCCCTCCTCGGCTTTTGATAAGCTTGTGAATGAAAGCTTGCAGGATCACTTGCTCATGCTATACTTATCTAGCATCACAAGGACACAGCTCAGCCTGGCTGAAAAATTGAACACGGCTGCTCAGATTCTGTGA	855	0.4316	MAASNRTVLQFSSSQTLSGKIHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESADQVALDIEYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFADGEGTIKAFVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTSVDKIPSNLEGMEASMTHLLTLIDDTYKYVDDVVEGRVNPDNKIGKCISDVVGSLPKIPSSAFDKLVNESLQDHLLMLYLSSITRTQLSLAEKLNTAAQIL	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04224	284	CDD	MPN_eIF3f	20	277	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Trre10g04224	284	ProSiteProfiles	MPN domain profile.	19	150	IPR037518	-
	Trre10g04224	284	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	12	281	-	-
	Trre10g04224	284	Pfam	Maintenance of mitochondrial structure and function	171	277	IPR024969	-
	Trre10g04224	284	Gene3D	Cytidine Deaminase, domain 2	6	185	-	-
	Trre10g04224	284	FunFam	Eukaryotic translation initiation factor 3 subunit F	7	185	-	-
	Trre10g04224	284	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	17	280	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Trre10g04224	284	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	20	120	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Trre10g04224	284	SMART	pad1_6	18	149	IPR000555	GO:0005515\|GO:0008233\|GO:0008237

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04224	Trre-Chr10	51683366	51687218	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04224	2	284	Eukaryotic Initiation Factors Gene Family	AT2G39990	73.196	1.40e-152	426

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04224	K03249		-	gmx:100786716	496.508