Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04222 ATGGAAGAGAGCATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAAAAGCAGCAGCAGCAGCACTGGCACAAAGTGTGGACGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGCACTGATCAAATTCAAAAAATATCCAATCAACTTAGTTTTTATGGTAAGATTGAGAGCAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGGGAAAGACAAAAACGTAGGAAGGTTTCTTTTGATGATGACAAGGATGTCTTCATTCATGGAAATCATCATCACAACTCTATGAATGCTTCAACACAAAGGTTTGTTGAGATGTACTCAGAGCCTGATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCATTTGATGAATCAGAATCATCAGAGAAGCTGAATATGCATATAAATGAATGCAGGGAAAATAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAGCATCCACCATTAGACTTGCGGTTGAGCTTTGTTTAG 555 0.3838 MEESMSGFCMRSSGSKSSSSSTGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVFIHGNHHHNSMNASTQRFVEMYSEPDRVIETLELFPLNSFDESESSEKLNMHINECRENNTMFAYTCTMGEQMEHPPLDLRLSFV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04222 184 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Trre10g04222 184 MobiDBLite consensus disorder prediction 1 29 - -
Trre10g04222 184 Gene3D - 7 92 - -
Trre10g04222 184 FunFam WUSCHEL-related homeobox 11 25 93 - -
Trre10g04222 184 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Trre10g04222 184 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Trre10g04222 184 SMART HOX_1 24 91 IPR001356 GO:0003677
Trre10g04222 184 CDD homeodomain 28 88 IPR001356 GO:0003677
Trre10g04222 184 MobiDBLite consensus disorder prediction 8 29 - -
Trre10g04222 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 110 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04222 Trre-Chr10 51675024 51676238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04222 1 184 Wox Gene Family AT3G11260 55.102 8.29e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre10g04222 Homeodomain 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04222 - - cam:101494967 253.062