Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04221 ATGGATGTGATAAAGACGCAACAAATTTCATGGAGAGCGATAGAGAAAGTCGTAGTTCATCCTCTAGTTTTGCTTAGCATAGTCGATAACTACAACAGAGTCGCCAAAGACACTCGCAAACGTGTCGTCGGTGTTTTGCTCGGTTCCTCTTTCAAAGGCACCGTTGATATCACCAACAGCTACGCCGTTCCATTTGAAGAAGATGATAAGGATCCTAGCATTTGGTTTCTAGATCATAATTATCATGAATCAATGTTCTCTATGTTTAAGAGAATCAATGCCAAGGAGCATGTTGTGGGGTGGTATAGTACCGGACCGAAATTGAGAGAAAATGATCTTGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATCGATGTTGAACCTAAGGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTCCATGTGCAGTCGGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTATCTTGACCTTGTCATTGATGGAAAGCTTCCCTTGAACCATGAGATCCTGTACCATTTGCAGGACGTATTCAACCTGCTTCCAAATCTTAATGTCACTGATTTGATCAAGGCATTTGCAGTGAAAACGAATGATATGATGCTAGTAATATACCTTTCATCTCTCATCAGAAGTGTAATTGCACTTCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCTGAAGACTCAAAATCAGTGCCTGTAGCTAGTACAGCAGGAAGTTGA 933 0.4041 MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVASTAGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04221 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Trre10g04221 310 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Trre10g04221 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre10g04221 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre10g04221 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Trre10g04221 310 Gene3D Cytidine Deaminase, domain 2 10 194 - -
Trre10g04221 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Trre10g04221 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04221 Trre-Chr10 51663360 51666105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04221 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 7.51e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04221 K03038 - gmx:100790393 587.03