Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04195 ATGGTTAAAGGAAGACAAGGAGAACGCATTAGGCTTTATACCAGGGGTACAGTTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAACACCTCTCTTGTCCAGATTGAGGGAGTAAACACCAAGGAAGAGGTTGCATGGTATGCTGGGAAGCGTATAGCGTACATTTACAAGGCCAAGGTTAAGAAGGACGGTAGCCACTATCGATGCATTTGGGGAAAGGTTAATAGGCCTCATGGTAACAGTGGAATAGTCCGTGCAAAGTTCACATCAAATCTGCCACCAAAATCAATGGGAGCCAGGGTTAGAGTATTAATGTATCCAAGCAACATATAA 339 0.4366 MVKGRQGERIRLYTRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRIAYIYKAKVKKDGSHYRCIWGKVNRPHGNSGIVRAKFTSNLPPKSMGARVRVLMYPSNI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04195 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Trre10g04195 112 SUPERFAMILY Translation proteins 12 105 IPR009000 -
Trre10g04195 112 Gene3D translation elongation factor selb, chain A, domain 4 7 112 IPR038661 -
Trre10g04195 112 Pfam Ribosomal protein L35Ae 12 105 IPR001780 GO:0003735|GO:0005840|GO:0006412
Trre10g04195 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
Trre10g04195 112 FunFam 60S ribosomal protein L35a 7 112 - -
Trre10g04195 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04195 Trre-Chr10 51406021 51407082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04195 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 88.393 2.63e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04195 K02917 - csav:115697954 222.631