Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04186 ATGCTAGAAAATGAGGACAATGTTCATGTTGTTTTAGACATAGACAACAATGTTTGTCCCCGGAGTATCGACTCCGGTGACCGGTCAGATGAGGATCAAATTCAAAGGTCTGAGATTGTTGGAGTGTCTGACAAACAAAGAAGATCTATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTGTTGAGTTGGATCTGGATGGTGTTGTAGTTTCTGATGTTAAGGTACATTTAGATAAAGTGGAGAGAGATTGTAGAATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAACTTGGATGTTCTTGTAAGGAGGATTTGGCTGCTGCTCATAAACATTGTGCTGAAGCTTGGTTCAAGATTAAGGGTAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAATATAATGAATCAAGTGATCCTTCCATGGTGCCACCAACCGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAAGGACACCGATTTTTAAATTTCCTTCTCGCATGTATGGTTTTCGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTGA 627 0.3907 MLENEDNVHVVLDIDNNVCPRSIDSGDRSDEDQIQRSEIVGVSDKQRRSIDSSESVESECSVELDLDGVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQYNESSDPSMVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04186 208 PANTHER ZINC FINGER, RING-CH-TYPE 37 207 - -
Trre10g04186 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Trre10g04186 208 ProSiteProfiles Zinc finger RING-CH-type profile. 77 143 IPR011016 GO:0008270
Trre10g04186 208 SMART ringv_2 84 137 IPR011016 GO:0008270
Trre10g04186 208 MobiDBLite consensus disorder prediction 155 175 - -
Trre10g04186 208 SUPERFAMILY RING/U-box 82 139 - -
Trre10g04186 208 Pfam RING-variant domain 85 136 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04186 Trre-Chr10 51327567 51330257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04186 24 208 C3H Transcription Factor Family AT5G05830 58.065 7.54e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04186 - - mtr:11413730 348.977