Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04168 ATGTCCGGTAGATCTTGTATTCAGCTTTTTTATCTCCTTCTTAGCCTTACTTCACTTATGGAAAAATGTTACACGTCTTCTGAAGATAACTTGAAGACTTACATTGTCTACACCGGAAATAACATAAATGACGAAACGTCTTCATTGTTTCTTTTTCAAAACATGCTACAACAAGTTGCAGAGAGCAGTTCAATACCAAGGCCTATACTCCACCATTACAAGCGTAGTTTTGGTGGTTTTGTCGTAAAGCTAACGGAGGAAGAAGCTGATAGAATGGCTGGACTTGATGAGGTCGTGTCTGTCTTTCTCGATGAAAAGAGACAACTCCTTACTACAAGATCTTGGAATTTTATAGGCTTTCCTCAACAATCGGAGATAGAATATTCTAAATCTGATGTCATAATCGGAGTGATTGATTCTGGAATTTGGCCAGAATCTGAAAGTTTCAATGATATAGGATTTACTCCACCACCAACCAAATGGAAGGGAACATGTCAAGCTTCCGATTTCAATTGCAACAATAAAATCATTGGAGCTAGATATTATAGAAATAATTTCGGAGAAGACTTCATGAACAATAATATTCTATCTCCACGAGACACAACTGGGCATGGGACCCATACAGCTTCAACGGCGGCCGGGAACCCAATTAACATGGCAAGTATGTTAGGCTTAGGCCAAGGGACAACAAGAGGTGGCGCTTCATCATCACGAATTGCGGTTTACAAAGCATGTTGGTCTGATGGATGTAAAGAAGTAGACATTCTCGCTGCATTTGATGATGCTATTGCTGATGGGGTTGATATAATATCCGTCTCACTTGGAGGAAAATCAAATCAAAGTATCTATTTTCAAGATGTATTATCGATTGGGGCATTCCATGCGATGAAAAATGGAATATTAACCGTGTTTGCAGCCGGGAACTCAGGTCCACAACGTTCATCCCTAACAAATTTTTCACCTTGGGCGATTGTTGTTGCTGCAAGTACATTAGATAGAAAGTTTGTTACCAAGATCAAATTAGGAGATAACAGAACTTTCGAGGGTGCCTCCCTGAATACATTTGATCTTAATGGAGAATTGTATCCTATTATCTATGGTGGTGATGCACCAAATACTGAAGCAGGTTTCAATAAAGATTTATCCAGAAATTGCATAATCGGTTCGTTGGATAACAAATTGGTGATGGGTAAAATTGTTTTATGCGAAGGAAGCGAAGGAGCCGAAGAGGCCCTTAGAGCAGGGGCTGTTGGTGTCTTGACACAGGGACACAAATTTATGGATGCAACATACCATTTTCCCTTACCTGGATGTTACCTTCAATCGACGGATGCTGCAAATATACATAAATACATATATTCTACAAGGACTCCAACTGCAACCATCTATAAGACAACTGAGTTCAAAGATAATTTGGCGCCCATGGTTGCCTCTTTCTCGTCAAGGGGTCCAAATAATGCTACACTTGAAATTCTCAAGCCGGATTTAATTGCTCCTGGAGTAAACATTATAGCTAGTTGGTCTCCAATTTGTCCGATTTCTGATACTTTCGGTGAGAATAGAAAATTGGAGTTCAACATTGTGTCAGGAACATCAATGGCATGTCCACACGTGGTTGGTGCAGCAGCGTACATTAAAACTTTTAATCCTACATGGTCACCTGCCGCTATTCGTTCAGCACTAATGACAACAGCTAAACAAATAAGTCCAGACAATCATGCAGAATTTGCTTATGGAGCTGGTCAAATTGACCCTATCAACGCTTTGAATCCCGGCTTAGTATACGAGGCAAATGAAGTAGACTACATAACATTTTTATGTGGTCAAGGTTTCAATACATCAACATTACAATTAATCACAGGCGAAAAAATTATTTGTTCAGAAATAGCTTATCCAACAGCACGTGACTTAAATTATCCTTCATTTGCTCTCAAAGCCCCCCATCCCAAACATCATATAAGTGGAAGCTTCAAAAGGACAGTTACAAATGTTGGATCACCGAATTCTACATATATAGCCATTTTGACAGTTTCTGAAGGACTTAATATTTCAGTGAATCCTGATATTTTATATTTCACTTCATTGGGGGAAAAACAGACATATGTTCTTAGTATAGATGGAAAAATTAAGAAATCTATTGAGTCGGCTTCTTTGATTTGGGATGATGGTAAATATCAAGTGAGAAGTCCTATTGTTATATTTGATGAACGGGCAGAGAAAGGAAACAGTGTTGATTTATATTGCATAAATTACTTATATATTGTAATTTTTAGTTTATTAGTTTATATTATTATCGGATAA 2301 0.3816 MSGRSCIQLFYLLLSLTSLMEKCYTSSEDNLKTYIVYTGNNINDETSSLFLFQNMLQQVAESSSIPRPILHHYKRSFGGFVVKLTEEEADRMAGLDEVVSVFLDEKRQLLTTRSWNFIGFPQQSEIEYSKSDVIIGVIDSGIWPESESFNDIGFTPPPTKWKGTCQASDFNCNNKIIGARYYRNNFGEDFMNNNILSPRDTTGHGTHTASTAAGNPINMASMLGLGQGTTRGGASSSRIAVYKACWSDGCKEVDILAAFDDAIADGVDIISVSLGGKSNQSIYFQDVLSIGAFHAMKNGILTVFAAGNSGPQRSSLTNFSPWAIVVAASTLDRKFVTKIKLGDNRTFEGASLNTFDLNGELYPIIYGGDAPNTEAGFNKDLSRNCIIGSLDNKLVMGKIVLCEGSEGAEEALRAGAVGVLTQGHKFMDATYHFPLPGCYLQSTDAANIHKYIYSTRTPTATIYKTTEFKDNLAPMVASFSSRGPNNATLEILKPDLIAPGVNIIASWSPICPISDTFGENRKLEFNIVSGTSMACPHVVGAAAYIKTFNPTWSPAAIRSALMTTAKQISPDNHAEFAYGAGQIDPINALNPGLVYEANEVDYITFLCGQGFNTSTLQLITGEKIICSEIAYPTARDLNYPSFALKAPHPKHHISGSFKRTVTNVGSPNSTYIAILTVSEGLNISVNPDILYFTSLGEKQTYVLSIDGKIKKSIESASLIWDDGKYQVRSPIVIFDERAEKGNSVDLYCINYLYIVIFSLLVYIIIG 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04168 766 Gene3D - 606 735 - -
Trre10g04168 766 Gene3D Peptidase S8/S53 domain 132 602 IPR036852 GO:0004252|GO:0006508
Trre10g04168 766 Pfam Subtilase family 131 581 IPR000209 GO:0006508|GO:0008236
Trre10g04168 766 Pfam Fibronectin type-III domain 636 733 IPR041469 -
Trre10g04168 766 Gene3D - 332 469 - -
Trre10g04168 766 CDD Peptidases_S8_3 108 565 IPR034197 -
Trre10g04168 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 109 IPR037045 -
Trre10g04168 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 732 IPR045051 -
Trre10g04168 766 FunFam Subtilisin-like protease SBT1.5 132 346 - -
Trre10g04168 766 Pfam Peptidase inhibitor I9 33 109 IPR010259 -
Trre10g04168 766 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Trre10g04168 766 PRINTS Subtilisin serine protease family (S8) signature 529 545 IPR015500 -
Trre10g04168 766 PRINTS Subtilisin serine protease family (S8) signature 200 213 IPR015500 -
Trre10g04168 766 CDD PA_subtilisin_like 339 462 - -
Trre10g04168 766 ProSiteProfiles Serine proteases, subtilase domain profile. 114 589 - -
Trre10g04168 766 SUPERFAMILY Subtilisin-like 109 593 IPR036852 GO:0004252|GO:0006508
Trre10g04168 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 530 540 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04168 Trre-Chr10 51041214 51047352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04168 29 734 Subtilisin-like Serine Gene Family AT5G59120 44.722 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04168 - - cam:101506276 1010.75