Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04161 ATGGCTCCTTCTACTGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTTTCTTCACACCCAGAGAGAAAATCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGAGGGTCCAATAGAGGAAGGAGTGGTCGTCATCTTCATGATCCTTCCGACGAAAGCTTGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATTTAGGCCATGCAATGTCACTTTCTTCAGCTGAAGATATGAAGAGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGAAAATGATGAAGATTATGGAAAGTCACTTCATGATAACTTTAGCTCATCTGCACACCCTCCATATGCTCCTGCACCATTTTATCCTACTGAATATAGAAGAATATGTGGTGGCTGCAACCAGGATATAATCTATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGATTGCTTTCGATGCCACTCTTGTCGCCATCCCATTACGGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCTCAAAAGTATTGCCCTTCTCATGAATATGATAATACCGGTCGCTGTTGTAGTTGCGAAAGATTAGAGCCTCGGAATATAAAATACTATCGACTTGAAGACGGACGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGCCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATTGATCAGCAAGTTCCAATGCTTCTTGTTGAGAGAGAAGCACTTAATGATGCTATTGTTGGAGAGAAAAGTGGATTTCATCATTTGCCAGAAACAAGAGGTTTATGCCTTTCAGAAGAACAGACTGTAACCAGTATACATAGAAGGCCAAGAATTGGAGGTCATAGACTTATTGGAATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTCACTGCAATTCTTGTTCTATATGGTTTACCAAGGTTGTTGACAGGTGCTATACTCGCGCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGCAATCTCAATCCAGAAGTAGAGGAAGGAATTTGTCAAGTTCTTTCATTTATGTGGCTTGAGTCAGAAGTTATGCCAACAAACTCTAATTGTATGCCATCAACATCTACAGTTGCTTCTTCTTCCTCTTCCTCTTCATCCTCAAAGAAAGGTGCACAGTCTCATGTTGAAAATAAATTGGGTGAATTCTTCAAGTATCAAATTTTCAATGATTCTTCCCCAGCTTATGGTGGTGGTTTTAGAGCTGCTAATGAAGCTGTTAATAAGTATGGTTTACGTAGTACTCTTGATCATATTCGTTTGACTGGTTTTTTCCCTGTGTAA 1524 0.397 MAPSTDINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHLHDPSDESLSWRAPSRALDDRARAQKEKEDLGHAMSLSSAEDMKRPNAHQGYRWGEENDEDYGKSLHDNFSSSAHPPYAPAPFYPTEYRRICGGCNQDIIYGNCLGCMDTYFHPDCFRCHSCRHPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTGRCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNDAIVGEKSGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSFMWLESEVMPTNSNCMPSTSTVASSSSSSSSSKKGAQSHVENKLGEFFKYQIFNDSSPAYGGGFRAANEAVNKYGLRSTLDHIRLTGFFPV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04161 507 Pfam LIM domain 142 195 IPR001781 -
Trre10g04161 507 CDD LIM_DA1 142 194 - -
Trre10g04161 507 SMART lim_4 141 193 IPR001781 -
Trre10g04161 507 MobiDBLite consensus disorder prediction 431 452 - -
Trre10g04161 507 FunFam Protein DA1-related 2 131 195 - -
Trre10g04161 507 PANTHER PROTEIN DA1-RELATED 2 33 506 IPR045218 -
Trre10g04161 507 Gene3D Cysteine Rich Protein 129 199 - -
Trre10g04161 507 MobiDBLite consensus disorder prediction 46 84 - -
Trre10g04161 507 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Trre10g04161 507 MobiDBLite consensus disorder prediction 43 84 - -
Trre10g04161 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Trre10g04161 507 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Trre10g04161 507 Pfam Protein DA1 291 502 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04161 Trre-Chr10 50990076 50993622 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g04161 DA1-like 1.7e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04161 - - gmx:100784976 929.087