Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04129 ATGGCTGAGATTTGTTGTGGTGTTGTTGGTGCCGGCGAAACTACGACTGCAACTATCGAACCAAACAAACGAAACTCCGTTCGCCGGAGTTTGGATTTTCTTCCGTTGAAATACATAGCTGACATGGCAATTCCGTCGGAAAATATTAGCCGAAAACGTCAGAAGCTAGATCAATCTATTTCTCCTCCGTCACAACAGAAGAGCGAAAAAGAAGTTGACAGTTCCGAATCAAGCACGAAGGAAAAATCTACGAAAAACGAAGTTGTATTAGTTACGAATCGTTCAAATGTTTCTGACATAGAAAACGAGGTTGTTGTTGTTGAAGAGTGTCCTAAGTATGGAATAACATCAGTTTGTGGAAGAAGAAGAGAAATGGAAGATTCTGTTTCGGTGCATCCATCGTTTTGTGAAGAAAAGAGTGAACAAAAACAGAAACCGTTTCATTTCTTCGGTGTTTACGACGGTCATGGTTGCTCACATGTTGCAACTATGTGTAAACAAAGGTTACATGAAATTGTTGATCAAGAAATAAACAAAGAGAAAGAGAAAGAAAGCGTTGACTGGAAGTCAACGATGGAGAAGAGTTTCATTCGCATGGATGAAGAGGTTTTGAATTCCACCAAAACAAAACAGAGCTTCACTTGTAAGTGTGAGCTTCAAACTCCTCATTGTGACGCCGTTGGTTCCACCGCCGTTGTTGCCGTTGTCACGCCGGAGAAAATCATTGTCTCCAATTGCGGTGATTCTCGTGCTATTCTTTGTCGTAACGGTGTCGCCGTTCCTCTTTCCTCTGATCACAAGCCGGATCGACCCGATGAGTTGGATCGGATAAACTCCGCTGGAGGACGTGTGATATATTGGGATGGTGCAAGAGTTCTCGGAGTCTTGGCCATGTCAAGAGCCATAGGGGACAATTATTTGAAACCGTACGTTATTTCGGAACCGGAGGTAACGGTAACGGAGAGGAGTGACGAGGATGAGTGTTTGATACTAGCCAGTGATGGTTTATGGGATGTGGTGGAAAATGACGTGGCATGTAGGGTAGTGCAGATGTGTTTAAAGGCGGAGAAAACGGTGTCGTCGCCCGGGTCACCAGGGAGTGTGGTGACGGGAAATGGGTCAGATAAGGCGTGTTCTGATGCTTCAATTTTGTTGACGAAGTTGGCTTTGGCGAGGCATAGTTCGGACAATGTTAGCGTGGTGGTTGTTGATTTGAGGAGAGATCAACGTCAACAATAA 1239 0.4447 MAEICCGVVGAGETTTATIEPNKRNSVRRSLDFLPLKYIADMAIPSENISRKRQKLDQSISPPSQQKSEKEVDSSESSTKEKSTKNEVVLVTNRSNVSDIENEVVVVEECPKYGITSVCGRRREMEDSVSVHPSFCEEKSEQKQKPFHFFGVYDGHGCSHVATMCKQRLHEIVDQEINKEKEKESVDWKSTMEKSFIRMDEEVLNSTKTKQSFTCKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAILCRNGVAVPLSSDHKPDRPDELDRINSAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDEDECLILASDGLWDVVENDVACRVVQMCLKAEKTVSSPGSPGSVVTGNGSDKACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04129 412 CDD PP2Cc 112 356 IPR001932 -
Trre10g04129 412 Gene3D - 99 412 IPR036457 -
Trre10g04129 412 SUPERFAMILY PP2C-like 111 406 IPR036457 -
Trre10g04129 412 SMART PP2C_4 98 403 IPR001932 -
Trre10g04129 412 Pfam Protein phosphatase 2C 112 397 IPR001932 -
Trre10g04129 412 MobiDBLite consensus disorder prediction 69 83 - -
Trre10g04129 412 MobiDBLite consensus disorder prediction 50 87 - -
Trre10g04129 412 FunFam Protein phosphatase 2C 37 107 412 - -
Trre10g04129 412 ProSiteProfiles PPM-type phosphatase domain profile. 112 405 IPR001932 -
Trre10g04129 412 ProSitePatterns PPM-type phosphatase domain signature. 149 157 IPR000222 GO:0043169
Trre10g04129 412 PANTHER PROTEIN PHOSPHATASE 75 405 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04129 Trre-Chr10 50605800 50607504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04129 73 412 PP2C-type Phosphatase Gene Family AT1G07430 58.402 4.58e-149 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04129 K14497 - gmx:100776356 486.108