Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04128 ATGGAGGGATTTCACTCTGATCAGTACTGGTTATGGATGAAGAGAACTCAAGTTGAAGCACCAATAGAATCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGAATATACTTAATGGTAGCATATGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGGAGAGACAGAGCTAGGCTCAAACAAAATCTTAGCCCTCATAATGAAATTCAAAAGAATGATTTCAAGTTTTCAACAAACTCATCAATAGTTAATGCAAGAGAAGAAAATTTTAAGGATTGTGTTGAAACAAGTTTATCTTTAGGATTGACTTCAATGTTTGGACAAAAATCATCAACTATTCTGTTGGGGAGTCTGGGGGAGCGTCAGAAGCAACATCGAGTTTCTTGTGAGGAAAAAGGTATGATCAGCTGTAAGAGATTGAAGACTAATAACATATCTTCATTGCCTTCTGTTTTTCTCAAGACATGTTCAAATGATCATCATAGGTTAATGGATTTTCAACCTTCAGAAATTGTGCTTGGACTTAATCATGAAATGGAAGATTTAGATCTTGAGCTTAGGCTAGGGAAACAACAGAAGTTTATTAAGTAG 648 0.3596 MEGFHSDQYWLWMKRTQVEAPIESWEEKAFAEDAARNILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHNEIQKNDFKFSTNSSIVNAREENFKDCVETSLSLGLTSMFGQKSSTILLGSLGERQKQHRVSCEEKGMISCKRLKTNNISSLPSVFLKTCSNDHHRLMDFQPSEIVLGLNHEMEDLDLELRLGKQQKFIK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04128 215 Pfam C2H2-type zinc finger 49 73 - -
Trre10g04128 215 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Trre10g04128 215 PANTHER OS07G0101800 PROTEIN 23 210 - -
Trre10g04128 215 Gene3D Classic Zinc Finger 45 109 - -
Trre10g04128 215 SMART c2h2final6 49 71 IPR013087 -
Trre10g04128 215 SUPERFAMILY beta-beta-alpha zinc fingers 46 76 IPR036236 -
Trre10g04128 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04128 Trre-Chr10 50596098 50596838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04128 10 76 C2H2 Transcription Factor Family AT4G17810 63.768 1.06e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g04128 zf-C2H2_6 2.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04128 - - tpra:123922631 399.053